AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nin5g01527 ATGTACGATGATATCGCTAATAATACGATGAATCCACATCCCGGTACCATAATCAACAACCCTCATGGCGGTGATGTCTATGCTGGTGTGCCCAAGGATTATATCGGAGATGCCGTAACTGCAGCAAACCTTTATGCCGTGCTTCTTGGTGATGCTACGGCAGTAAAAGGTGGAAGCGGAAAGGTTGTGGCCAGCCAGCCGAACGATAGGATCTTTGTGTATTACACAGATCATGGAGGCCCTGGAATCCTAGGAACACCGAACGGGCCTTTCATTTTTGCAAACGATTTGATTGCGTCTTTGGAGAAGAAGCATGCTAGTGGTACCTACAAAGAGATGGTTATATATGTCGAAGCGTGCGAAAGTGGTAGTATCTTCGATGGTTTGTTGTCTCAAGACTTAAACATTTTCGTCACAACAGCGTCGAATCCAAATGAGAGCAGTTGGGCAACTTATTGTCCAGGAATGAATCCTCCCCCGCCTCCCGAGTATGCAACGTGTTTAGGAGACTTGTATAGCATTTCTTGGATGGAAGACAGTGATTCGGAAAACGTAAGGAATGAAACATTGCAACAACAATATGAGAAGGTTAAACTGAGGACTTACAATAACCATTCGTACTTCGGTTCTCATGTCATGGAGTACGGCACTCAGAGCATGAGTGACGAAACCGTTTCAGTTTATCAAGGTTGTGGGCCCACTTTCAACTTTTCATCCGCAAATACATTCCAATATAATGAAGCCATGGAGGGTGTCGACCAAAGAGATGCCGATATATTTTCCATGTGGGAAAGGTACAAAAAGTTAACAGATGGGCAACAAAAGAAAGAGGCTCTAAAGGAAATAACAGAGATAATGGCACATAGGGTGCACCTTGATAGCAGCGTGGAGTCGATAGGTGTTTACTTGTTTGGCCATGAACATGCCGATTTAGCTCTCCATTCCCTGCGGAGTCCAGGGTTAGCCGTTGTGGATGATTGGGCATGCCTTAAATCTACGGTAGTTCGGACGTTTGAGACACATTGTGGCGTGTTGACACAATATGGAATGAAACATATGCGAGCATTCGCCAATATTTGCAACAATGGCATCAATAATGCGGCAATGGAGGAGGCTTCTGCAACTACATGTAGCGGGTATGACATGGGACAGTGGAACCCTTCAACGTCCGAAGGGATCCAGTGCCCAACTACCGACTCCTCCCGGAATTGCGTTATCGGAGCCAAGCCAGGAATGGCCGTTAGTGGACACGGAAAAAAGGGGAAGGAGAAGGATCTTCTTCGGTGGATCCCTCTTGCTCCTGTTTAG 1308 46.18 MYDDIANNTMNPHPGTIINNPHGGDVYAGVPKDYIGDAVTAANLYAVLLGDATAVKGGSGKVVASQPNDRIFVYYTDHGGPGILGTPNGPFIFANDLIASLEKKHASGTYKEMVIYVEACESGSIFDGLLSQDLNIFVTTASNPNESSWATYCPGMNPPPPPEYATCLGDLYSISWMEDSDSENVRNETLQQQYEKVKLRTYNNHSYFGSHVMEYGTQSMSDETVSVYQGCGPTFNFSSANTFQYNEAMEGVDQRDADIFSMWERYKKLTDGQQKKEALKEITEIMAHRVHLDSSVESIGVYLFGHEHADLALHSLRSPGLAVVDDWACLKSTVVRTFETHCGVLTQYGMKHMRAFANICNNGINNAAMEEASATTCSGYDMGQWNPSTSEGIQCPTTDSSRNCVIGAKPGMAVSGHGKKGKEKDLLRWIPLAPV 435
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nin5g01527 435 CDD legumain-C 256 377 IPR048501 -
Nin5g01527 435 PRINTS Hemoglobinase (C13) cysteine protease signature 33 48 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Nin5g01527 435 PRINTS Hemoglobinase (C13) cysteine protease signature 61 80 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Nin5g01527 435 PRINTS Hemoglobinase (C13) cysteine protease signature 110 126 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Nin5g01527 435 Pfam Peptidase C13 family 1 230 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Nin5g01527 435 FunFam Vacuolar-processing enzyme beta-isozyme 254 382 - -
Nin5g01527 435 Gene3D - 254 384 IPR046427 -
Nin5g01527 435 Pfam Legumain, prodomain 280 377 IPR048501 -
Nin5g01527 435 Gene3D - 1 253 - -
Nin5g01527 435 PANTHER HEMOGLOBINASE FAMILY MEMBER 1 377 IPR001096 GO:0004197(PANTHER)|GO:0006508(InterPro)|GO:0006624(PANTHER)|GO:0008233(InterPro)|GO:0051603(PANTHER)
Nin5g01527 435 PIRSF AE 1 394 IPR043577 GO:0004197(InterPro)|GO:0051603(InterPro)
Nin5g01527 435 PIRSF Legumain 1 394 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nin5g01527 K01369 legumain [EC:3.4.22.34]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nin Nin-Chr5:23732749 Nin5g01530 Nin-Chr5:23766559 dispersed
Nin Nin-Chr5:23732749 Nin5g01528 Nin-Chr5:23743183 tandem