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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nin5g01540 ATGGCGGCCAACTCCTACTTCACCCTCGCGGTGAGTAACTTGAATCCGATGATAATGAACTATCTCTTGGGGAAGGAGGATGGTGGCGGTCATGATTCCTTGGGGCCGCTAATCTTGATGGCAAGGCCTAGAGGGTGGACGCTCATTTCCACGAGTGGGAACAGTCAGTTGTCTGATGATGAAGGCTGCCTGCTCGGCTACCACTGTCAACAGGTCCTGGCGCCTCGCCCCTGCCTCTCTGAATTGGCGTTCCTCGAACCATTGCATTGGGTTGTTCTTTATAATGAGAATAGATTTGCTGCTTTCTTGGGGCTGGGGTGGATGGGATTTGGACGCCTCGAGCCTTGCGCTCTTGTCGTAGTACGCCCACCCCTGGACGTGGTGGGGACAGTTAAGCCTAGACCTGTGGTTGCTGGTGGAGGTGCAGTTGAGGCTGTCATATGTATTTATTTGGATTTTTTTGCTACAAGTTTAGGATCTTGGGAGCAATTGGCAATTGTTGAATTTGCTGAATCCTTGTTAATCATTCCAAAGGTTCTTGCAGTCAATGCAGCAAAGGATGCAAATGATTTTGTTGCTAAATTGCCGTCATACCACAATACTACACAAACAAAGGCTGATAAGAAGCAGTTATTAAGGTAG 642 48.6 MAANSYFTLAVSNLNPMIMNYLLGKEDGGGHDSLGPLILMARPRGWTLISTSGNSQLSDDEGCLLGYHCQQVLAPRPCLSELAFLEPLHWVVLYNENRFAAFLGLGWMGFGRLEPCALVVVRPPLDVVGTVKPRPVVAGGGAVEAVICIYLDFFATSLGSWEQLAIVEFAESLLIIPKVLAVNAAKDANDFVAKLPSYHNTTQTKADKKQLLR 213
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nin5g01540 213 SUPERFAMILY GroEL equatorial domain-like 134 203 IPR027413 -
Nin5g01540 213 PANTHER CHAPERONIN 130 204 IPR017998 GO:0005832(PANTHER)|GO:0006457(PANTHER)|GO:0051082(PANTHER)|GO:0140662(InterPro)
Nin5g01540 213 Pfam TCP-1-cpn60 chaperonin family 131 205 IPR002423 GO:0005524(InterPro)
Nin5g01540 213 Gene3D - 120 210 IPR027413 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nin5g01540 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nin Nin-Chr1:41461847 Nin5g01540 Nin-Chr5:24089441 dispersed
Nin Nin-Chr5:24082799 Nin5g01540 Nin-Chr5:24089441 tandem