AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nin5g01546 ATGAGCATGGGAGAGCTTCTCAATGTCGAACCTCTTGAGCTCAAATTCCCCTTTGAATTGAAGAAGCAGATTTCTTGTTCGCTTCAATTATCGAATAAAACTGAGAATCATGTAGCATTCAAGGTGAAGACGACGAATCCTAAGAAGTATTGTGTTCGTCCAAATACAGGAGTTGTATTGCCCAGATCAACATGCGATATTATAGTAACAATGCAAGCTCAGAAAGAGGCTCCTCCTGACATGCAATGTAAGGACAAGTTTCTCCTCCAGAGTGTAGTTGCAAGCCCAGGTGCAACCCCAAAGGACGTGGGCGCTGAAATGTTCAATAAGGAGACGGGGCATGTTGTTGAAGAGTGCAAGTTGAGAGTTGTTTATCTTCCGCCTCCACAACCCCCTTCACCAGTGGCAGAGGGGTCAGAGGAAGGATCTTCACCGAAGGCAACAGTGATGGAGAATGGGAATCTGAATGGCTCTGAGGTTTCAAGACAATACGTCGAAGCTCATGACAAATCCTCGGAGGTACGATCTCTTATTTCAAAGTTGACTGACGAAAAGAATGACGCTCTTCAGCAAAGCGGCCGACTTCGTCAGGAACTGGAGCTCTTCAGGCGTGGAGGCAACAAGAGTCAAGGAGGTGTTTCACTAATGTTTGTCATCATCTTCGGATTGCTCGGTCTAGTTTTGGGGTATATCGTGAAGAAGACATAA 708 45.76 MSMGELLNVEPLELKFPFELKKQISCSLQLSNKTENHVAFKVKTTNPKKYCVRPNTGVVLPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVVASPGATPKDVGAEMFNKETGHVVEECKLRVVYLPPPQPPSPVAEGSEEGSSPKATVMENGNLNGSEVSRQYVEAHDKSSEVRSLISKLTDEKNDALQQSGRLRQELELFRRGGNKSQGGVSLMFVIIFGLLGLVLGYIVKKT 235
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nin5g01546 235 FunFam Vesicle-associated protein 1-1 1 129 - -
Nin5g01546 235 ProSiteProfiles Major sperm protein (MSP) domain profile. 6 126 IPR000535 -
Nin5g01546 235 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 6 232 IPR016763 GO:0005789(InterPro)|GO:0005789(PANTHER)|GO:0005886(PANTHER)|GO:0061817(PANTHER)|GO:0090158(PANTHER)
Nin5g01546 235 Pfam MSP (Major sperm protein) domain 7 111 IPR000535 -
Nin5g01546 235 Gene3D Immunoglobulins 2 129 IPR013783 -
Nin5g01546 235 PIRSF VAMP-assoc-prot 1 234 IPR016763 GO:0005789(InterPro)
Nin5g01546 235 Coils Coil 178 198 - -
Nin5g01546 235 MobiDBLite consensus disorder prediction 130 154 - -
Nin5g01546 235 SUPERFAMILY PapD-like 2 141 IPR008962 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nin5g01546 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nin Nin-Chr5:24731746 Nin6g00913 Nin-Chr6:10563254 dispersed