Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Nin5g01546 | ATGAGCATGGGAGAGCTTCTCAATGTCGAACCTCTTGAGCTCAAATTCCCCTTTGAATTGAAGAAGCAGATTTCTTGTTCGCTTCAATTATCGAATAAAACTGAGAATCATGTAGCATTCAAGGTGAAGACGACGAATCCTAAGAAGTATTGTGTTCGTCCAAATACAGGAGTTGTATTGCCCAGATCAACATGCGATATTATAGTAACAATGCAAGCTCAGAAAGAGGCTCCTCCTGACATGCAATGTAAGGACAAGTTTCTCCTCCAGAGTGTAGTTGCAAGCCCAGGTGCAACCCCAAAGGACGTGGGCGCTGAAATGTTCAATAAGGAGACGGGGCATGTTGTTGAAGAGTGCAAGTTGAGAGTTGTTTATCTTCCGCCTCCACAACCCCCTTCACCAGTGGCAGAGGGGTCAGAGGAAGGATCTTCACCGAAGGCAACAGTGATGGAGAATGGGAATCTGAATGGCTCTGAGGTTTCAAGACAATACGTCGAAGCTCATGACAAATCCTCGGAGGTACGATCTCTTATTTCAAAGTTGACTGACGAAAAGAATGACGCTCTTCAGCAAAGCGGCCGACTTCGTCAGGAACTGGAGCTCTTCAGGCGTGGAGGCAACAAGAGTCAAGGAGGTGTTTCACTAATGTTTGTCATCATCTTCGGATTGCTCGGTCTAGTTTTGGGGTATATCGTGAAGAAGACATAA | 708 | 45.76 | MSMGELLNVEPLELKFPFELKKQISCSLQLSNKTENHVAFKVKTTNPKKYCVRPNTGVVLPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVVASPGATPKDVGAEMFNKETGHVVEECKLRVVYLPPPQPPSPVAEGSEEGSSPKATVMENGNLNGSEVSRQYVEAHDKSSEVRSLISKLTDEKNDALQQSGRLRQELELFRRGGNKSQGGVSLMFVIIFGLLGLVLGYIVKKT | 235 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Nin5g01546 | 235 | FunFam | Vesicle-associated protein 1-1 | 1 | 129 | - | - | |
| Nin5g01546 | 235 | ProSiteProfiles | Major sperm protein (MSP) domain profile. | 6 | 126 | IPR000535 | - | |
| Nin5g01546 | 235 | PANTHER | VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN | 6 | 232 | IPR016763 | GO:0005789(InterPro)|GO:0005789(PANTHER)|GO:0005886(PANTHER)|GO:0061817(PANTHER)|GO:0090158(PANTHER) | |
| Nin5g01546 | 235 | Pfam | MSP (Major sperm protein) domain | 7 | 111 | IPR000535 | - | |
| Nin5g01546 | 235 | Gene3D | Immunoglobulins | 2 | 129 | IPR013783 | - | |
| Nin5g01546 | 235 | PIRSF | VAMP-assoc-prot | 1 | 234 | IPR016763 | GO:0005789(InterPro) | |
| Nin5g01546 | 235 | Coils | Coil | 178 | 198 | - | - | |
| Nin5g01546 | 235 | MobiDBLite | consensus disorder prediction | 130 | 154 | - | - | |
| Nin5g01546 | 235 | SUPERFAMILY | PapD-like | 2 | 141 | IPR008962 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Nin5g01546 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Nin | Nin-Chr5:24731746 | Nin6g00913 | Nin-Chr6:10563254 | dispersed |