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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nin5g01568 ATGGCTTCAGAATTGGTGATCAGTGCTAACTCTTGTACTCGTAAAATGATATTCTTTTTCTTAATTTTTCTATCACGTGCGTTTTCTTCATGTAATTCTACTAGTGAAAAGTGGGCAGGACCATCCGGGCACGGGCTCATCACGGTCGACCTAAATGGCTTGGGCAACTTCCTGTCAGTGCAGGCTGCCGTAGACTCCGTCCCGATCGATAACAGGAAGAATATCATCATCCGAATCTCCGCAGGCTTTTACAAAGAGAAGGTGGTGGTGCCGGCGAGGAAGCCATACATAACGTTTCAAGGGGAAGGGAGAGAAGTGACTGTGATAGAGTGGCATGACAGGGCAAGTGACCGTGGTCCCGACGGCCAGCAGCTGCGTACTTATCAGACTGCTTCCGTCACCGTCTTCGCTCCTTATTTCTCGGCCCGTAACATTACTTTCAAGAATACGGCACCGGCACCGATGCCAGGGATGCAAGGATGGCAAGCAGCAGCATTTAGGATATCGGGCGACAAAGCATTGTTTTGGGGTTGTGGATTCTATGGAGCGCAAGACACTTTATGTGATGATGCGGGGAGGCATTACTTCAAAGAGTGTTACATAGAGGGTTCCATCGACTTCATTTTCGGCAACGGCCGTTCCATGTACAAAGATTGTGAGCTGCACTCGATAGCAACGAGATTTGGATCCATTGCAGCACAAGATCGGAACCGGTTGGATGAAAAGACGGGTTTTGCATTTGTAGGGTGTCGGGTAACGGGTTCTGGACCTCTTTATGTGGGTCGGGCGATGGGTCAATACTCGAGGATAGTGTACTCGTACACATATTTCGATGACGTGGTTGCACATGGTGGATGGGATGACTGGGACCACACTAGCAACAAGAACAAGACTGCCTATTTTGGAGTTTACAGGTGTTGGGGCCCAGGGGCAGCGGCAGTCAGAGGGGTATCGTGGGCCCGAGAGCTTGATTACGATTCGGCCCATAAGTTCCTGTCCAAGAGTTTTGTCAATGGAAGACACTGGATTGCGCCTTCTGATGCTTAA 1047 49.76 MASELVISANSCTRKMIFFFLIFLSRAFSSCNSTSEKWAGPSGHGLITVDLNGLGNFLSVQAAVDSVPIDNRKNIIIRISAGFYKEKVVVPARKPYITFQGEGREVTVIEWHDRASDRGPDGQQLRTYQTASVTVFAPYFSARNITFKNTAPAPMPGMQGWQAAAFRISGDKALFWGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAQDRNRLDEKTGFAFVGCRVTGSGPLYVGRAMGQYSRIVYSYTYFDDVVAHGGWDDWDHTSNKNKTAYFGVYRCWGPGAAAVRGVSWARELDYDSAHKFLSKSFVNGRHWIAPSDA 348
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nin5g01568 348 FunFam Pectinesterase 42 345 - -
Nin5g01568 348 Gene3D - 46 347 IPR012334 -
Nin5g01568 348 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 22 344 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Nin5g01568 348 SUPERFAMILY Pectin lyase-like 45 345 IPR011050 -
Nin5g01568 348 ProSitePatterns Pectinesterase signature 2. 201 210 IPR033131 -
Nin5g01568 348 Pfam Pectinesterase 47 339 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nin5g01568 K01051 pectinesterase [EC:3.1.1.11]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nin Nin-Chr4:48195087 Nin5g01568 Nin-Chr5:25629317 dispersed
Nin Nin-Chr5:25629317 Nin7g00043 Nin-Chr7:959958 dispersed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Nin1g00263 . 1 446 Carbohydrate Esterase gene family AT5G14310 56.793 1.24e-162 460.0
Nin1g00988 . 20 324 Carbohydrate Esterase gene family AT1G24793 54.754 2.41e-120 347.0
Nin1g02751 . 51 476 Carbohydrate Esterase gene family AT1G26120 65.734 0.0 554.0
Nin1g02752 . 51 476 Carbohydrate Esterase gene family AT1G26120 65.734 0.0 554.0
Nin1g03011 . 16 554 Carbohydrate Esterase gene family AT1G23200 51.73 0.0 530.0
Nin1g03012 . 64 196 Carbohydrate Esterase gene family AT5G53370 31.507 3.28e-14 69.7
Nin2g00689 . 9 247 Carbohydrate Esterase gene family AT1G53840 35.317 1.45e-35 131.0
Nin2g01081 . 4 325 Carbohydrate Esterase gene family AT3G48700 44.136 8.16e-94 284.0
Nin2g02497 . 182 265 Carbohydrate Esterase gene family AT5G14310 54.762 1.11e-21 89.7
Nin2g03181 . 132 581 Carbohydrate Esterase gene family AT1G53840 56.36 0.0 520.0
Nin2g03186 . 1 586 Carbohydrate Esterase gene family AT1G53840 61.356 0.0 712.0
Nin2g03187 . 13 592 Carbohydrate Esterase gene family AT3G14310 56.388 0.0 639.0
Nin2g03188 . 13 592 Carbohydrate Esterase gene family AT3G14310 60.441 0.0 664.0
Nin2g03189 . 5 592 Carbohydrate Esterase gene family AT3G14310 64.638 0.0 749.0
Nin3g00416 . 225 566 Carbohydrate Esterase gene family AT3G62170 45.869 8.61e-87 290.0
Nin3g00550 . 1 343 Carbohydrate Esterase gene family AT3G63010 76.093 0.0 556.0
Nin3g00567 . 103 162 Carbohydrate Esterase gene family AT5G61570 55.0 6.35e-15 71.6
Nin3g00699 . 77 238 Carbohydrate Esterase gene family AT1G53840 30.061 1.97e-16 75.1
Nin3g00732 . 499 558 Carbohydrate Esterase gene family AT2G47550 76.667 2.62e-27 103.0
Nin3g00734 . 6 571 Carbohydrate Esterase gene family AT4G02330 60.175 0.0 699.0
Nin3g00735 . 264 578 Carbohydrate Esterase gene family AT1G02810 72.381 3.25e-179 506.0
Nin3g00736 . 31 224 Carbohydrate Esterase gene family AT4G02330 42.051 7.12e-39 139.0
Nin3g00737 . 28 578 Carbohydrate Esterase gene family AT1G02810 55.696 0.0 622.0
Nin3g00738 . 49 532 Carbohydrate Esterase gene family AT4G02300 54.343 0.0 546.0
Nin3g00844 . 61 357 Carbohydrate Esterase gene family AT5G47500 45.847 1.46e-87 268.0
Nin3g00854 . 4 588 Carbohydrate Esterase gene family AT3G62170 40.722 8.37e-136 406.0
Nin3g00945 . 30 135 Carbohydrate Esterase gene family AT3G16970 25.926 1.20e-06 45.4
Nin3g01699 . 100 326 Carbohydrate Esterase gene family AT3G48700 38.793 6.13e-53 172.0
Nin4g00193 . 1 446 Carbohydrate Esterase gene family AT5G14310 71.674 0.0 651.0
Nin4g00297 . 1 446 Carbohydrate Esterase gene family AT5G14310 71.674 0.0 651.0
Nin4g00671 . 59 352 Carbohydrate Esterase gene family AT5G47500 37.874 2.08e-68 216.0
Nin4g00890 . 35 422 Carbohydrate Esterase gene family AT3G02410 69.133 0.0 568.0
Nin4g01720 . 18 331 Carbohydrate Esterase gene family AT1G68620 50.154 2.88e-112 328.0
Nin4g02056 . 5 561 Carbohydrate Esterase gene family AT3G10710 51.22 0.0 601.0
Nin4g02286 . 65 415 Carbohydrate Esterase gene family AT3G05910 76.068 0.0 605.0
Nin4g02295 . 11 525 Carbohydrate Esterase gene family AT3G43270 61.185 0.0 671.0
Nin4g02296 . 31 547 Carbohydrate Esterase gene family AT2G26440 62.868 0.0 681.0
Nin4g02297 . 31 547 Carbohydrate Esterase gene family AT2G26440 62.752 0.0 680.0
Nin4g02298 . 1 612 Carbohydrate Esterase gene family AT2G26450 50.965 0.0 605.0
Nin4g02311 . 62 583 Carbohydrate Esterase gene family AT1G53830 41.744 6.80e-127 384.0
Nin4g02323 . 51 192 Carbohydrate Esterase gene family AT3G14310 28.205 1.53e-14 70.9
Nin4g02586 . 59 357 Carbohydrate Esterase gene family AT5G47500 49.333 8.82e-103 307.0
Nin4g02949 . 10 566 Carbohydrate Esterase gene family AT3G05610 47.15 0.0 582.0
Nin5g00012 . 12 567 Carbohydrate Esterase gene family AT3G05610 41.652 7.29e-161 472.0
Nin5g00224 . 8 346 Carbohydrate Esterase gene family AT4G19410 46.334 1.16e-105 313.0
Nin5g00225 . 7 380 Carbohydrate Esterase gene family AT4G19420 45.288 2.58e-117 345.0
Nin5g00231 . 8 383 Carbohydrate Esterase gene family AT4G19420 44.819 9.13e-113 332.0
Nin5g00247 . 8 383 Carbohydrate Esterase gene family AT4G19420 46.632 2.33e-125 365.0
Nin5g00250 . 63 380 Carbohydrate Esterase gene family AT4G19420 42.33 6.92e-99 296.0
Nin5g00444 . 7 566 Carbohydrate Esterase gene family AT3G05610 48.382 0.0 583.0
Nin5g00743 . 80 131 Carbohydrate Esterase gene family AT3G14320 55.769 2.66e-14 66.6
Nin5g01506 . 74 213 Carbohydrate Esterase gene family AT3G14310 30.986 4.27e-15 70.1
Nin5g01507 . 62 218 Carbohydrate Esterase gene family AT1G53830 25.478 1.65e-10 57.8
Nin5g01516 . 62 218 Carbohydrate Esterase gene family AT1G53830 26.752 2.10e-12 63.2
Nin5g01518 . 66 218 Carbohydrate Esterase gene family AT1G53830 27.451 7.98e-11 58.5
Nin5g01568 . 50 362 Carbohydrate Esterase gene family AT5G47500 80.831 0.0 540.0
Nin5g01821 . 216 450 Carbohydrate Esterase gene family AT4G02300 50.213 1.66e-74 233.0
Nin5g01822 . 282 346 Carbohydrate Esterase gene family AT4G02300 50.769 2.75e-13 63.9
Nin5g01874 . 70 388 Carbohydrate Esterase gene family AT1G05310 37.92 1.26e-72 229.0
Nin5g02126 . 23 306 Carbohydrate Esterase gene family AT1G68620 39.116 4.21e-65 207.0
Nin5g02332 . 64 159 Carbohydrate Esterase gene family AT1G25141 30.476 4.96e-06 43.5
Nin6g00006 . 81 594 Carbohydrate Esterase gene family AT3G47400 56.783 0.0 586.0
Nin6g00008 . 7 511 Carbohydrate Esterase gene family AT2G45220 56.415 0.0 582.0
Nin6g00546 . 36 307 Carbohydrate Esterase gene family AT5G16080 32.632 8.28e-38 138.0
Nin6g00547 . 36 306 Carbohydrate Esterase gene family AT1G68620 36.364 1.13e-49 167.0
Nin6g00838 . 40 224 Carbohydrate Esterase gene family AT5G53370 25.51 2.15e-12 63.5
Nin6g00844 . 12 511 Carbohydrate Esterase gene family AT2G45220 66.667 0.0 706.0
Nin6g00846 . 14 511 Carbohydrate Esterase gene family AT2G45220 67.194 0.0 696.0
Nin6g00847 . 16 511 Carbohydrate Esterase gene family AT2G45220 68.849 0.0 707.0
Nin6g00849 . 61 511 Carbohydrate Esterase gene family AT2G45220 47.692 3.72e-126 377.0
Nin6g00852 . 7 511 Carbohydrate Esterase gene family AT2G45220 67.251 0.0 707.0
Nin6g00853 . 7 511 Carbohydrate Esterase gene family AT2G45220 67.251 0.0 706.0
Nin6g00854 . 7 511 Carbohydrate Esterase gene family AT2G45220 67.446 0.0 709.0
Nin6g00855 . 7 511 Carbohydrate Esterase gene family AT2G45220 67.251 0.0 706.0
Nin6g00856 . 7 511 Carbohydrate Esterase gene family AT2G45220 67.446 0.0 709.0
Nin6g00857 . 7 511 Carbohydrate Esterase gene family AT2G45220 67.251 0.0 706.0
Nin6g00858 . 7 511 Carbohydrate Esterase gene family AT2G45220 67.446 0.0 709.0
Nin6g00859 . 147 339 Carbohydrate Esterase gene family AT2G45220 59.091 3.31e-67 211.0
Nin6g00860 . 8 511 Carbohydrate Esterase gene family AT2G45220 67.641 0.0 706.0
Nin6g00861 . 19 511 Carbohydrate Esterase gene family AT2G45220 68.924 0.0 704.0
Nin6g00862 . 7 511 Carbohydrate Esterase gene family AT2G45220 67.446 0.0 712.0
Nin6g00863 . 147 511 Carbohydrate Esterase gene family AT2G45220 72.654 0.0 538.0
Nin6g01247 . 11 265 Carbohydrate Esterase gene family AT5G14310 46.304 9.81e-61 197.0
Nin6g02287 . 18 554 Carbohydrate Esterase gene family AT1G23200 48.463 4.60e-163 473.0
Nin6g02688 . 4 557 Carbohydrate Esterase gene family AT1G11580 57.424 0.0 639.0
Nin6g02689 . 53 147 Carbohydrate Esterase gene family AT1G11580 40.206 2.49e-16 71.2
Nin6g02690 . 298 557 Carbohydrate Esterase gene family AT1G11580 73.462 2.13e-142 409.0
Nin6g02691 . 4 557 Carbohydrate Esterase gene family AT1G11580 58.497 0.0 655.0
Nin6g02692 . 4 557 Carbohydrate Esterase gene family AT1G11580 48.571 6.09e-174 500.0
Nin7g00043 . 65 388 Carbohydrate Esterase gene family AT1G05310 71.296 0.0 508.0
Nin7g01033 . 28 342 Carbohydrate Esterase gene family AT5G16080 31.515 1.57e-49 167.0
Nin7g01479 . 7 389 Carbohydrate Esterase gene family AT4G19420 64.752 0.0 575.0
Nin7g01564 . 91 388 Carbohydrate Esterase gene family AT1G05310 55.369 2.98e-122 358.0
Nin7g02238 . 13 332 Carbohydrate Esterase gene family AT2G19150 42.415 5.30e-90 271.0
Nin8g00073 . 13 317 Carbohydrate Esterase gene family AT1G19190 41.368 1.63e-83 253.0
Nin8g00074 . 12 280 Carbohydrate Esterase gene family AT3G48690 46.097 4.33e-74 231.0
Nin8g00075 . 4 312 Carbohydrate Esterase gene family AT1G19190 45.048 7.13e-84 256.0
Nin8g00076 . 4 313 Carbohydrate Esterase gene family AT1G19190 45.397 1.36e-89 270.0
Nin8g00800 . 237 543 Carbohydrate Esterase gene family AT3G05620 79.545 0.0 530.0
Nin8g01221 . 26 586 Carbohydrate Esterase gene family AT5G53370 53.22 0.0 627.0
Nin8g01322 . 7 380 Carbohydrate Esterase gene family AT5G55590 57.219 7.42e-134 384.0
Nin8g01323 . 18 380 Carbohydrate Esterase gene family AT5G55590 53.678 2.02e-120 350.0
Nin8g01528 . 28 341 Carbohydrate Esterase gene family AT5G16080 30.838 3.20e-48 164.0
Nin8g01601 . 13 427 Carbohydrate Esterase gene family AT3G09410 60.859 0.0 546.0
Nin8g02341 . 5 284 Carbohydrate Esterase gene family AT2G41530 82.857 6.95e-179 496.0
Nin8g02904 . 7 359 Carbohydrate Esterase gene family AT5G47500 39.943 1.28e-88 268.0
Nin9g00022 . 29 342 Carbohydrate Esterase gene family AT5G16080 34.783 1.05e-55 182.0
Nin9g01436 . 493 695 Carbohydrate Esterase gene family AT5G36210 25.806 3.25e-17 84.3
Nin9g02208 . 6 358 Carbohydrate Esterase gene family AT1G69940 55.899 8.13e-153 432.0
Nin9g02209 . 2 358 Carbohydrate Esterase gene family AT5G07410 56.389 2.44e-153 435.0
Nin9g02210 . 14 361 Carbohydrate Esterase gene family AT1G69940 55.84 2.61e-151 429.0
Nin9g02211 . 178 350 Carbohydrate Esterase gene family AT1G69940 55.172 5.41e-66 213.0
Nin9g02212 . 14 361 Carbohydrate Esterase gene family AT1G69940 56.125 3.57e-152 431.0
Nin9g02213 . 178 351 Carbohydrate Esterase gene family AT1G69940 54.286 1.71e-66 212.0
Nin9g02214 . 14 151 Carbohydrate Esterase gene family AT1G69940 54.286 8.02e-46 159.0
Nin9g02251 . 8 359 Carbohydrate Esterase gene family AT5G61570 51.359 2.35e-118 345.0
Nin9g02326 . 9 511 Carbohydrate Esterase gene family AT2G45220 46.667 7.47e-154 447.0
Nin9g02327 . 81 594 Carbohydrate Esterase gene family AT3G47400 42.994 1.84e-131 392.0
Nin9g02328 . 11 511 Carbohydrate Esterase gene family AT2G45220 64.971 0.0 696.0
Nin9g02329 . 29 511 Carbohydrate Esterase gene family AT2G45220 57.677 0.0 582.0
Nin9g02330 . 81 594 Carbohydrate Esterase gene family AT3G47400 56.783 0.0 586.0
Nin9g02341 . 62 218 Carbohydrate Esterase gene family AT1G53830 33.758 1.88e-24 98.2
Nin9g02342 . 54 215 Carbohydrate Esterase gene family AT3G14310 33.537 1.15e-23 96.3
Nin9g02343 . 62 219 Carbohydrate Esterase gene family AT1G53830 34.568 5.60e-22 92.4
Nin9g02344 . 62 219 Carbohydrate Esterase gene family AT1G53830 32.278 9.87e-21 87.4
Nin9g02345 . 38 218 Carbohydrate Esterase gene family AT3G14310 30.435 8.59e-23 93.2
Nin9g02346 . 38 218 Carbohydrate Esterase gene family AT3G14310 30.435 8.59e-23 93.2
Nin9g02408 . 41 330 Carbohydrate Esterase gene family AT5G16080 37.748 1.84e-51 172.0
Nin9g02542 . 9 405 Carbohydrate Esterase gene family AT5G23870 61.905 0.0 532.0
Nin9g02706 . 1 597 Carbohydrate Esterase gene family AT3G49220 65.113 0.0 815.0
Nin9g02708 . 495 709 Carbohydrate Esterase gene family AT5G36210 21.333 1.44e-06 50.1
Nin9g02794 . 23 358 Carbohydrate Esterase gene family AT5G07430 49.271 3.64e-115 337.0
Nin9g02802 . 42 125 Carbohydrate Esterase gene family AT3G16970 35.227 3.14e-09 49.3