AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nin5g01572 ATGGCGGCGGCATTATCGCCGGCGGCTACTTCTCTCCGACTAAAACCCTTCTCCGCCGTCCGATTCTTCTCCCTTTACCGCCAAAAATTTATCCCAGAACTTCAAAACCTAACCTCTGTTCCGCTGTGCCCGCGAAAAAACTCCAACAATTTTCACCTTGTTTCTTCTCCATACATTCCCCGAAACCCAGAATTCCCGACCGCTAATCGTAGATTCTGTATAGCAGTTTCCGCAGCCGTATCTTCCGGCGAGGCAACTGAAACTGTTACGAACAAGCGGGGAAGTGCCGGAGAAGTCGGGGAATTCCGGAAACGGCTGAGGATTGGAGATATAAAGGGAGGGCCGGATGAGGGTTTGGATAGGTTAGGTGAGACGTTGATTGTGAGGGGTTGGGTTCGAACACTTCGTTTGCAGAGTAGTGTCACCTTCATCGAGGTTAATGATGGCTCATGCCTTTCAAACATGCAATGTGTGATGGACGCGGAGGCCGAAGGTTATGATCAGGTGGAGAGTGGCTTGATCACCACTGGTGCATCAGTATGTGTACAAGGAACAGTAGTAAAGAGCCAAGGTTCAAAGCAGAAGATAGAGTTGAAGGTTCAGAAACTTGTAACAGTAGGTACATGTGATCCATCATATCCTATCCAAAAGAAAAGAGTCAGCAGAGAGTTTTTGAGAAGCAAGGCACATCTTCGTCCCAGAACAAACACTTTTGGTGCGGTAACTCGGGTAAGGAACGCTTTGGCCTATGCGACACACAAGTTTTTCCAAGATAATGGCTTTGTATGGATCTCAAGTCCTATCATCACTGCTTCAGATTGCGAAGGAGCTGGCGAACAATTCTGTGTGACCACCTTGATACCAAGCTCCAGAGAAGCATTTGACTCTCCAGCCGAAGCGATCCCCAAAACAAATGATGGCTTGATTGATTGGTCACAGGATTTTTTTGAAAAACCCGCATTCTTGACTGTCTCTGGTCAACTTAATGCTGAAACATACGCCACTGCTCTTTCTGACGTGTATACATTTGGCCCTACATTCCGGGCAGAAAATTCCAATACTTCCAGACATTTGGCTGAATTTTGGATGATTGAACCTGAGCTCGCATTTGCGGATTTGAATGATGACATGGCCTGTGCAACTGCCTATCTCCAGTATGTCGTGAAATATGTTCTTGAAAACTGCAAGGAAGATATGGATTTCTTTAATACTTGGATCGAGAAAGGAATTATCAGCAGACTGAATGATGTGGTGGAGAAAAGCTTTGTGCAATTGACGTACTCAGATGCAGTTGAACTACTACTAAAAGCAAGCAAGAAATTTGAGTTTCCTGTGAAATGGGGATGTGATTTGCAAAGTGAGCATGAGCGTTACATCACTGAGGAAGTCCTTGGTGGATGTCCTGTAATTATAAGAGATTATCCAAAGGAGATCAAGGCATTCTACATGCGGCAAAACGATGATGGAAAAACTGTTGCAGCCATGGATCTGTTGGTGCCCAGGGTTGGTGAGCTAATTGGTGGAAGCCAAAGAGAAGAACGTCTCGACTACTTGGAAGATCGGCTAGATGAATTAAAGCTCAATAAGGAAAGCTATTGGTGGTATCTTGATCTTCGGCGTTATGGTTCGGTTCCCCACTCGGGCTTTGGACTGGGCTTTGAGAGACTTGTGCAGTTTGCAACTGGTATAGAGAATATTAGGGATGCAATACCTTTTCCTCGAGCACCTGGATCCGCTGAATTTTGA 1746 45.59 MAAALSPAATSLRLKPFSAVRFFSLYRQKFIPELQNLTSVPLCPRKNSNNFHLVSSPYIPRNPEFPTANRRFCIAVSAAVSSGEATETVTNKRGSAGEVGEFRKRLRIGDIKGGPDEGLDRLGETLIVRGWVRTLRLQSSVTFIEVNDGSCLSNMQCVMDAEAEGYDQVESGLITTGASVCVQGTVVKSQGSKQKIELKVQKLVTVGTCDPSYPIQKKRVSREFLRSKAHLRPRTNTFGAVTRVRNALAYATHKFFQDNGFVWISSPIITASDCEGAGEQFCVTTLIPSSREAFDSPAEAIPKTNDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVKYVLENCKEDMDFFNTWIEKGIISRLNDVVEKSFVQLTYSDAVELLLKASKKFEFPVKWGCDLQSEHERYITEEVLGGCPVIIRDYPKEIKAFYMRQNDDGKTVAAMDLLVPRVGELIGGSQREERLDYLEDRLDELKLNKESYWWYLDLRRYGSVPHSGFGLGFERLVQFATGIENIRDAIPFPRAPGSAEF 581
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nin5g01572 581 Pfam OB-fold nucleic acid binding domain 128 203 IPR004365 GO:0003676(InterPro)
Nin5g01572 581 CDD AsxRS-core 219 577 - -
Nin5g01572 581 Gene3D - 107 211 IPR012340 -
Nin5g01572 581 SUPERFAMILY Class II aaRS and biotin synthetases 209 579 IPR045864 -
Nin5g01572 581 Gene3D Bira Bifunctional Protein; Domain 2 214 579 IPR045864 -
Nin5g01572 581 SUPERFAMILY Nucleic acid-binding proteins 120 209 IPR012340 -
Nin5g01572 581 NCBIfam asparagine--tRNA ligase 122 581 IPR004522 GO:0000166(InterPro)|GO:0004816(InterPro)|GO:0005524(InterPro)|GO:0006421(InterPro)
Nin5g01572 581 Hamap Asparagine--tRNA ligase [asnS]. 111 581 IPR004522 GO:0000166(InterPro)|GO:0004816(InterPro)|GO:0005524(InterPro)|GO:0006421(InterPro)
Nin5g01572 581 PRINTS Aspartyl-tRNA synthetase signature 536 550 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Nin5g01572 581 PRINTS Aspartyl-tRNA synthetase signature 338 351 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Nin5g01572 581 PRINTS Aspartyl-tRNA synthetase signature 322 334 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Nin5g01572 581 PRINTS Aspartyl-tRNA synthetase signature 496 512 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Nin5g01572 581 FunFam Asparagine--tRNA ligase 214 580 - -
Nin5g01572 581 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 243 571 IPR006195 -
Nin5g01572 581 PANTHER ASPARTYL-LYSYL-TRNA SYNTHETASE 87 580 - GO:0004816(PANTHER)|GO:0005739(PANTHER)|GO:0006421(PANTHER)
Nin5g01572 581 Pfam tRNA synthetases class II (D, K and N) 224 574 IPR004364 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Nin5g01572 581 CDD EcAsnRS-like-N 125 208 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nin5g01572 K01893 asparaginyl-tRNA synthetase [EC:6.1.1.22]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nin Nin-Chr4:47732928 Nin5g01572 Nin-Chr5:25799732 dispersed
Nin Nin-Chr5:25799732 Nin8g01714 Nin-Chr8:25211713 dispersed