AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nin5g01573 ATGGCGTCCAATCCTCCATTCCAGGTGGAGGATCAGACCGATGAAGATTTCTTTGATAAACTGGTGAATGATTCGGATGATGATTATAAGGTTATTCCCAATTTAGCAGAAGACAATGATTCTGACGAAGCTCGAGCTTTTGCTAATTTGAATATTAGTGATATAGGAACCGGATTTGAAGATTCGGCCACAGTAGCTAAAGGGCAAGCTATTGAAGATGATATTCAAGGTTCTTCTGTAAATGAGGAGTTCAAAGACGAGTCAACTGAGATTGTTCGAGAGAGAGCCGGTAATTTGATAGGGCCTTCCAGTTCGTTTTCTTTTGATGGTGGGAATGAACCAAATAATGAGGTAACAGTGTCTGATCCAACAGAAAGCAGGGATAATGGACCTGGAGGTTCTGGTATCAAGGAGGTACAATGGAGTGCCTTTACTTCTGATCCTAAGCAGAATGGCAGTAGTGGGTTTGGATCTTACTCTGACTTTTTCACTGAATTTGGAAATAGCAGTAACGACCTGAGTGCGAAAGGGGATAACTTGATTGATGAATCAAATTTTGTATCTGGCAGTGCAGTAGGTACCTCTGCATATGTGGAAAGTGCAAATGTGTACGCAAATCAAGTTCAAGAGGGAGGTCAAGTTTATGCCACAGCTCCAGAACAAACTGTAGAAGGGCAAGATGTAAACAGCAGTCAATACTGGGAGAATCTTTATCCAGGGTGGAAGTTCGATACAAATAGTGGGCAATGGTATCAAGTGGATGAAAATTGTAATGCCACAGAAAACGTACAAGGATTTCAAGTAGATGAATCTTATCATGCAAATGTACAAGGTTATCTGGTGGAGGATGGTTATAATGCTGCAGCGAATGTACAAGAGGGGTATCATTCCGGTGCCGCTACTGACTGGGCTTTGTCTAATAAGAAACCAGAGGTTTCTTATTTGCAGCAAACTGCACAATCAGTAACTGGGTCTGTATCTGAGAAAGGCACGACTGAAAGCGTGACCAGTTGGAATCCAGATTCACAAGCTAATTACACCGACAACAGCTCATTGGAATGGAATCAGGCCTCACAAGAAAACGGCGGGTATCCCTCACATATGGTTTTTGATCCGCAATACCCTGGTTGGTATTATGACACCATTGCCCTTGAATGGCGTTCTTTGGATGCATATAATTCTCAAATACAACAGCAGGACCAGCTCAATTTAAATGGATTCTCTTCAACTAACACTTCCTATGAATATGGTCAGAAAATATATGGTGCTCACAACCAATTAGAGAAGCATGGATCTGAAGCCCTTGGTAGCCAAGGACAAGATTTTAACTGGAATGAGTCCGTCACTAACGTCCAACAACAGGGCTCGAATATGTGGCAACCTAACACTGCCGCAAAGAGTGTGTCTACTTCTGATTTTAGAGGAACACAACAAACCCAGAATCACTATGGCACTAATTTTTCTGTAAACAACCATGTTATTCAACAAAATCCTTATGGTTATGGGGGAGCGACTTCATCTTTCGAGAAATCTAGTCAAGGCAGTGACTTACCTTCTGTTTCAGTGCCGCGTCCCTTTGTTCCTGGGAATTTCAGCCAGCCATTCAATCAAACAAGAATCGATCATAATGAGATGATGAATGCATCCGAAAGTTATTATGGCGATCAGAATACTTTGACATATTCCCAGCAAACAATTCCGAATGGTCAGCAGTTCTCTTATACTCCTGCTGCAGGAAGGTCTTCTGCTGGCCGTCCTGCTCATGCATTGGTTACATTTGGTTTTGGTGGCAAGCTGCTTGTGATGAAAGATAGTGCTTCCATTGCGAACGCGTCCTATGGAAACCATGATCCAAAAGGTGGATCCATTTCAGTTCTTAACTTGGCAGATGCGTCACTGGCGGAGCCAATGCTTCAAGTGGCGAACAGGGCACATGAGTTGAACAAGTGGATTGATGAGAGGATCGCACACGCTGAATCTGCTGATATGAATTACCGGAAACTTGAAGTTTTGAAATTGCTCCTTTCACTGTTAAAAATTGCTTCTCAACATTATGGGAAACTTCGTTCTCCTTTTGGCACTGATACTACTTTGAAGGAAAATGACTCTCCAGAAGTAGCTGTTGCTAGACTTTTTGCATCTGCCAAGAGAAATGGTGCACAGGTCAGTGAGTATGGCAATCTTGCCGAGTGCTTGCAACAATTGCCTTCTGAGGGACAGATGCGGGCAACTGCTGCAGAAGTCCAATCGCTTCTGGTTTCTGGTAGAAAAAAAGAGGCCCTCAGCTGTGCACAACAGGGTCAACTGTGGGGACCGGCTCTTGTTCTTGCTGCACAACTTGGCGATCATTTTTATGTGGAGACTATTAAGCAAATGGCAGTTCGCCAGCTAGTAGCAGGGTCACCTTTGCGGACGTTGTGCCTACTTATTGCTGGTCAACCTGCAGATGTCTTTTCAGCAGATACCCTCACTGTTGGTGGTGTACCTGGTGTACATATGTCTCAGCAACTTCCGCAGACTCAGCCGGGTTCTAATTTTATGCTTGATGATTGGGAAGAGAATTTGGCTGTGATCACTGCTAATAGGACAAAAGATGATGAGCTAGTGCTTATTCATCTTGGAGATTGTTTGTGGAAGGAAAGAAGTGATATTTTTGCTGCACACATATGTTACTTAGTGGCAGAAGCAAGCTTTGAGCCTTATTCAGATAGTGCGAGAATGTGTCTCATTGGTGCAGATCACTGGAAGAACCCACGAACATATGCTTCTCCAGAAGCTATTCAAAGGACAGAGGTCTATGAGTATTCGAAACTGCTTGGAAACTCGCAGTTCACCTTGCTTCCATTTCAACCATATAAAATTGTATATGCTCACATGTTGGCTGAAGTAGGAAGAATCTCAGACTCAATGAAGTACTGTCAAGCCGTATCGAAATCTCTAAAAACCAGCCGAGCACCTGAAGTCGAAACATTTAGATTATTAGTGTCATCCCTAGAGGATAGGATAAAAACTCACCAACAGGGTGGGTTCTCAACAAATTTGGCTCCTGGAAAATTAGTTGGTAAGTTGTTGAACCTTTTCGACAGCACTGCTCATCGTGTTGTTGGTGGGTTACCACCACCTATACCATCAACAGCTGGAAGCAGTATACAAAGTGACCGTCATCAGCAATCCATGGCCCCTAGGGTATCAACTAGTCAGTCAACAATGGCAATGTCATCTCTAGTGCCTTCATCCTCAATGGAACCCATTAATGAGCGGACAGCTGATGGCAACAGGAGAATCATGCATAACAGAAGTGTTTCTGAGCCTGACTTTGGTCGGACTCCCAGGCAGGTTGATTCATCGAAGGACCCGACCTCGGCCGATTCACAAAGTAAAGCAGCTGGGGGAACATCACGCTTTGGAAGGTTCAATTTGTTCCAAAAGACTGTGGATTTTCTAAAGCCTCGTCAGGATAAACAGGCAAAATTGGGCGAGACAAATAAGTTTTATTATGATGAGAGACTCAAGAGATGGGTGGAGGAAGGTGCTGAGCCCCCAACAGAGGAATCAGCACTTCCGCCGCCTCCAACAATGACAACTTTCCAGAATGGAACATCAGATTACAATTTGAAGAGTGCCTTAAAAAGTGAAGGGCATCTCAGCAATGGGAGCCCAGAGTTCACAAGCCCTACTTCTCAAGGACATAGTTCAGGAATTCCTCCCATTCCAACCGCCTCAAACCAATTCTCAGCTCGTGGAAGAACAGGTGTACGACAAAGGTATGTTGACACTTTCAACCAAGGTGGTAGCTACCCAACCACCTTGTTCCAGTCTCCGGTTGCCCCTTCCGTCAATCGTGCTGCCACCGGTGCCAATCCAACATTTTTTGTTCCTTCGCCAGTACCTTCAGCTGAAAATCCAGTCAACAATACTCTTACGGAGAACAACCTGCATCAACCTCCTGCCATTAATGAAAATCCGTCCTCATCCGCTATGAATTTTGACTCATTTCAAACTCCTAATCAACCACCACCAAGCATGCAAAGGTTTGGGAGCATGGATGATATCTCATCCAGGGGACCTTCAACAAGCACTCAAAACTCACTTACACCTCGCTCTCGAAGAACAGCCTCGTGGAGTGGTGGAAGCTTTGATAAAGCTATTAGTCCTCCGAATGAGACACAACTAAAACCTCTGGGGGAGGTTTTAGGTATGCATCCATCTTCGTTTATGCCAAGTCAACCTGCTGGATCAACGCACTCCCCAGTTAACGGTGGCAGTTTCGCAGATGATCTCCACGAAGTGGAACTTTGA 4299 44.34 MASNPPFQVEDQTDEDFFDKLVNDSDDDYKVIPNLAEDNDSDEARAFANLNISDIGTGFEDSATVAKGQAIEDDIQGSSVNEEFKDESTEIVRERAGNLIGPSSSFSFDGGNEPNNEVTVSDPTESRDNGPGGSGIKEVQWSAFTSDPKQNGSSGFGSYSDFFTEFGNSSNDLSAKGDNLIDESNFVSGSAVGTSAYVESANVYANQVQEGGQVYATAPEQTVEGQDVNSSQYWENLYPGWKFDTNSGQWYQVDENCNATENVQGFQVDESYHANVQGYLVEDGYNAAANVQEGYHSGAATDWALSNKKPEVSYLQQTAQSVTGSVSEKGTTESVTSWNPDSQANYTDNSSLEWNQASQENGGYPSHMVFDPQYPGWYYDTIALEWRSLDAYNSQIQQQDQLNLNGFSSTNTSYEYGQKIYGAHNQLEKHGSEALGSQGQDFNWNESVTNVQQQGSNMWQPNTAAKSVSTSDFRGTQQTQNHYGTNFSVNNHVIQQNPYGYGGATSSFEKSSQGSDLPSVSVPRPFVPGNFSQPFNQTRIDHNEMMNASESYYGDQNTLTYSQQTIPNGQQFSYTPAAGRSSAGRPAHALVTFGFGGKLLVMKDSASIANASYGNHDPKGGSISVLNLADASLAEPMLQVANRAHELNKWIDERIAHAESADMNYRKLEVLKLLLSLLKIASQHYGKLRSPFGTDTTLKENDSPEVAVARLFASAKRNGAQVSEYGNLAECLQQLPSEGQMRATAAEVQSLLVSGRKKEALSCAQQGQLWGPALVLAAQLGDHFYVETIKQMAVRQLVAGSPLRTLCLLIAGQPADVFSADTLTVGGVPGVHMSQQLPQTQPGSNFMLDDWEENLAVITANRTKDDELVLIHLGDCLWKERSDIFAAHICYLVAEASFEPYSDSARMCLIGADHWKNPRTYASPEAIQRTEVYEYSKLLGNSQFTLLPFQPYKIVYAHMLAEVGRISDSMKYCQAVSKSLKTSRAPEVETFRLLVSSLEDRIKTHQQGGFSTNLAPGKLVGKLLNLFDSTAHRVVGGLPPPIPSTAGSSIQSDRHQQSMAPRVSTSQSTMAMSSLVPSSSMEPINERTADGNRRIMHNRSVSEPDFGRTPRQVDSSKDPTSADSQSKAAGGTSRFGRFNLFQKTVDFLKPRQDKQAKLGETNKFYYDERLKRWVEEGAEPPTEESALPPPPTMTTFQNGTSDYNLKSALKSEGHLSNGSPEFTSPTSQGHSSGIPPIPTASNQFSARGRTGVRQRYVDTFNQGGSYPTTLFQSPVAPSVNRAATGANPTFFVPSPVPSAENPVNNTLTENNLHQPPAINENPSSSAMNFDSFQTPNQPPPSMQRFGSMDDISSRGPSTSTQNSLTPRSRRTASWSGGSFDKAISPPNETQLKPLGEVLGMHPSSFMPSQPAGSTHSPVNGGSFADDLHEVEL 1432
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nin5g01573 1432 Pfam Vesicle coat trafficking protein Sec16 mid-region 588 686 IPR024340 -
Nin5g01573 1432 Gene3D - 584 1002 - -
Nin5g01573 1432 MobiDBLite consensus disorder prediction 1113 1132 - -
Nin5g01573 1432 MobiDBLite consensus disorder prediction 1406 1420 - -
Nin5g01573 1432 CDD ACE1-Sec16-like 743 1006 - -
Nin5g01573 1432 MobiDBLite consensus disorder prediction 1038 1135 - -
Nin5g01573 1432 MobiDBLite consensus disorder prediction 1300 1385 - -
Nin5g01573 1432 MobiDBLite consensus disorder prediction 1087 1101 - -
Nin5g01573 1432 MobiDBLite consensus disorder prediction 100 128 - -
Nin5g01573 1432 MobiDBLite consensus disorder prediction 100 138 - -
Nin5g01573 1432 MobiDBLite consensus disorder prediction 1300 1432 - -
Nin5g01573 1432 MobiDBLite consensus disorder prediction 1177 1249 - -
Nin5g01573 1432 PANTHER RGPR-RELATED 1 1396 IPR024880 GO:0006914(InterPro)|GO:0007030(PANTHER)|GO:0012507(PANTHER)|GO:0048208(InterPro)|GO:0070971(PANTHER)|GO:0070973(PANTHER)
Nin5g01573 1432 MobiDBLite consensus disorder prediction 1189 1249 - -
Nin5g01573 1432 MobiDBLite consensus disorder prediction 1044 1086 - -
Nin5g01573 1432 Pfam Sec23-binding domain of Sec16 748 1016 IPR024298 -
Nin5g01573 1432 MobiDBLite consensus disorder prediction 322 343 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nin5g01573 K20353 COPII coat assembly protein SEC16