AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nin5g01590 ATGCCATATGATTTGCAAAGCAAGGTGCTTTTTGGTGGTTCAGAGTCAAATTGCAAAAAAGAAGGCAGTTTTGCTAGCAATGAACCCATATCTGTTCTTGATTCCAGGAGAAGCCCTAGCCCTTCCACCTCCACATCCACTCTCTCCTCCTCTTTCGGTGGTGGCGGCGGCGCCACCACTGAGAACGCCGCCGCCGTCGTTGCCGGTGACAACAGCGAGAAATGGACGGCCGGTTCTGTGCCTCAAGAAATGGGTATTTCTGGGTCTTTGGTTGTTCCCTCCTCCGCCGTCGCCGGCGGGTGCCGGAAGGATGAGTGGGGGGCGGAGGAGCTCCAACTTCAGCCAATCCAAGCTGGATTCGAGAATAATAATGGCAGTTCTCAGAGATTTGGGGGTGGGTTAGATGATTGGGAGAGCTTGTTTTCTGAATCTGGTCAAGAAGAACAAGACCAGTCTTTGCTCCGGTGGATTTCCGGCGACGGCGAGGAAACTCCGGTCAGCCTCAAACAACTGTTGCAGCAGGGAAGTCAAATTGACGAGAGTGGCCCTCTGGGTTCCATTGATCAACCCCCTCCTCATAATCCCACCATTTTTGAAACTCCATCAAGCTTGAACAACTTTCCGGGTCCTGCCACAAACCCGAATTTCAACCCGCAAATCCCCAGCCTTTTCGGTGTAGCAGAACGAAAACCTCAAATTTCGCCCAACCCAATTCCACTTCCAATATACCCATCACAAGTTCAAGCTCAGGCATATCCTCCATTCATACCTGACCTCCAATTCCAGCAGCCTCAACCAAAGCGTCACAATCCGGGTTACCCGAAACCCCCATCGTTTGACCCGGGGCCTCAAATGGGTCTGATGGCTCATAAGCAGCTTATTTGCGACCTGCTTTTCAAAGCAGCAGATTTCATTTATGCTGGGAATTTCTCACACGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTTTTCCCCATGTAGTAATAATACTAATACTAATGGTAAGCCCTTTCAAAGATGTGCTTTTTACTTCAAAGAAGCTCTGCTAATGGGCTTCTTGATGCAGCCAAGAATTCCAACTCCATTTAATGGTATGTTTAAGATGGGTGCTTATAAGGTCCTTTCTGAAGTTTCTCCAATTATTCAGTTTATGAATTTCACTTGCAACCAAACCCTTCTTGAGGGCATTGAAGATGCTGAGAGAATTCATGTGATCGATTTCGATATCGGGTTTGGGGCACAATGGGCTTCTTTCATACAAGAACTTCCTAGGAGAAAGATTAACAACAATGGGGGGAGTTCGATTTCGTTAAAGATTACTGCTTTTGCATCCCCTTCAACCCACCATCCTATTGAGCTTGGGCTTATGCATGAGAATTTGTCACAGTTTGCTCATGATGTTGGTATCCCTTTCGAACTCGAAGTTGTCAACTTTGATTCCTTTGATCCTCGTTCATTTTCGGTATCCGGAAACGAGGCGATTGTTGTGAACTTCCCTATCTGGTCTGTCTCTACGCACTTAGCGGCGATCCCCTCTCTGCTGCACTTCATAAAACAGCTCTCCCCGAGAATTGTGGTGTCGCTGGATCGCGGGTGTGAAAGGATTGATCTGCCATTAACGCACTACGTCCTCCATGGGCTTCAGTATTACGAGGCCCTGTTAGACTCCATTGATGCTGCGAATGTTGCTCCCGATACGGTTAATAAGGTTGAGAGGTTCCTTTTCCAGCCTAGCATCGAAAACATGGTTTTGGGCCGAATTCAATTTCCTGAACAGATGTCACATTGGAAAACCATGTTTTCTTCTGGTGGGTACTCCCCTGTTCCATTGAGCAATTTCGCAGAAGCTCAGGCAGAATGTGTTGTGAAGAGAATGCAGATTCGAGGGTTTCATGTGGAGAGGAGGCAGGCTAATTCGCTCGTCTTATGCTGGCAGCATAGGGAGTTGATGTCAGTTTCTGCGTGGAAGTGCTAG 1980 48.03 MPYDLQSKVLFGGSESNCKKEGSFASNEPISVLDSRRSPSPSTSTSTLSSSFGGGGGATTENAAAVVAGDNSEKWTAGSVPQEMGISGSLVVPSSAVAGGCRKDEWGAEELQLQPIQAGFENNNGSSQRFGGGLDDWESLFSESGQEEQDQSLLRWISGDGEETPVSLKQLLQQGSQIDESGPLGSIDQPPPHNPTIFETPSSLNNFPGPATNPNFNPQIPSLFGVAERKPQISPNPIPLPIYPSQVQAQAYPPFIPDLQFQQPQPKRHNPGYPKPPSFDPGPQMGLMAHKQLICDLLFKAADFIYAGNFSHAQGILARLNHQLFSPCSNNTNTNGKPFQRCAFYFKEALLMGFLMQPRIPTPFNGMFKMGAYKVLSEVSPIIQFMNFTCNQTLLEGIEDAERIHVIDFDIGFGAQWASFIQELPRRKINNNGGSSISLKITAFASPSTHHPIELGLMHENLSQFAHDVGIPFELEVVNFDSFDPRSFSVSGNEAIVVNFPIWSVSTHLAAIPSLLHFIKQLSPRIVVSLDRGCERIDLPLTHYVLHGLQYYEALLDSIDAANVAPDTVNKVERFLFQPSIENMVLGRIQFPEQMSHWKTMFSSGGYSPVPLSNFAEAQAECVVKRMQIRGFHVERRQANSLVLCWQHRELMSVSAWKC 659
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nin5g01590 659 ProSiteProfiles GRAS family profile. 285 658 IPR005202 -
Nin5g01590 659 MobiDBLite consensus disorder prediction 198 218 - -
Nin5g01590 659 Pfam GRAS domain family 296 658 IPR005202 -
Nin5g01590 659 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 292 657 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Nin5g01590 659 MobiDBLite consensus disorder prediction 178 218 - -
Nin5g01590 659 MobiDBLite consensus disorder prediction 19 57 - -
Nin5g01590 659 MobiDBLite consensus disorder prediction 13 67 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nin5g01590 K27747 protein hairy meristem
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nin Nin-Chr5:26779496 Nin6g00909 Nin-Chr6:10490583 dispersed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Nin1g01548 . 2 409 GRAS Transcription Factor family AT3G49950 45.775 4.13e-122 359.0
Nin1g02525 . 43 170 GRAS Transcription Factor family AT2G01570 44.366 2.47e-24 100.0
Nin1g02996 . 35 582 GRAS Transcription Factor family AT2G01570 63.589 0.0 696.0
Nin2g00143 . 251 471 GRAS Transcription Factor family AT1G14920 66.809 2.00e-105 314.0
Nin2g01708 . 366 466 GRAS Transcription Factor family AT3G54220 47.748 5.24e-26 100.0
Nin2g02161 . 16 592 GRAS Transcription Factor family AT1G21450 51.684 0.0 546.0
Nin2g03085 . 9 510 GRAS Transcription Factor family AT3G13840 47.122 1.16e-152 446.0
Nin3g00810 . 178 547 GRAS Transcription Factor family AT3G03450 29.688 2.12e-50 180.0
Nin3g01313 . 19 531 GRAS Transcription Factor family AT1G14920 62.05 0.0 684.0
Nin3g02125 . 6 404 GRAS Transcription Factor family AT5G41920 62.818 1.00e-171 486.0
Nin3g02458 . 27 529 GRAS Transcription Factor family AT1G14920 49.515 9.83e-165 476.0
Nin3g03213 . 215 582 GRAS Transcription Factor family AT2G01570 23.99 3.37e-16 79.3
Nin3g03215 . 242 584 GRAS Transcription Factor family AT5G66770 27.933 6.38e-22 97.4
Nin3g03216 . 241 583 GRAS Transcription Factor family AT5G66770 27.042 1.01e-19 89.7
Nin4g00083 . 144 507 GRAS Transcription Factor family AT1G66350 43.947 1.24e-98 311.0
Nin4g00799 . 24 478 GRAS Transcription Factor family AT1G50420 36.842 2.00e-99 303.0
Nin4g01302 . 12 409 GRAS Transcription Factor family AT3G49950 60.396 0.0 513.0
Nin4g01374 . 1 530 GRAS Transcription Factor family AT4G37650 59.15 0.0 576.0
Nin4g01777 . 25 485 GRAS Transcription Factor family AT4G36710 49.58 4.53e-143 419.0
Nin4g01779 . 25 485 GRAS Transcription Factor family AT4G36710 49.58 4.53e-143 419.0
Nin4g01780 . 25 485 GRAS Transcription Factor family AT4G36710 49.58 4.53e-143 419.0
Nin4g01810 . 1 584 GRAS Transcription Factor family AT5G66770 58.101 0.0 622.0
Nin4g02619 . 305 332 GRAS Transcription Factor family AT3G50650 82.143 6.18e-07 49.3
Nin5g01253 . 1 654 GRAS Transcription Factor family AT1G63100 54.559 0.0 628.0
Nin5g01590 . 94 555 GRAS Transcription Factor family AT4G00150 39.439 7.99e-105 327.0
Nin5g01902 . 338 445 GRAS Transcription Factor family AT1G55580 27.778 4.00e-13 62.4
Nin5g01903 . 150 508 GRAS Transcription Factor family AT1G66350 31.3 2.42e-53 189.0
Nin5g01904 . 170 546 GRAS Transcription Factor family AT3G03450 30.491 9.20e-57 196.0
Nin5g01908 . 313 480 GRAS Transcription Factor family AT2G01570 30.178 1.28e-25 101.0
Nin6g00909 . 199 555 GRAS Transcription Factor family AT4G00150 63.926 1.13e-157 468.0
Nin6g01313 . 1 482 GRAS Transcription Factor family AT1G50420 61.777 0.0 585.0
Nin7g01203 . 126 530 GRAS Transcription Factor family AT4G37650 51.389 4.16e-142 414.0
Nin7g01335 . 4 482 GRAS Transcription Factor family AT1G50420 67.22 0.0 654.0
Nin7g02009 . 244 458 GRAS Transcription Factor family AT1G14920 56.957 8.64e-76 238.0
Nin8g00003 . 39 145 GRAS Transcription Factor family AT5G41920 51.852 4.85e-24 95.9
Nin8g00955 . 28 489 GRAS Transcription Factor family AT5G48150 54.694 0.0 518.0
Nin8g01300 . 140 283 GRAS Transcription Factor family AT1G50600 49.315 8.83e-33 122.0
Nin8g01301 . 197 490 GRAS Transcription Factor family AT5G48150 81.293 1.61e-175 492.0
Nin8g01465 . 16 444 GRAS Transcription Factor family AT1G55580 45.175 3.06e-122 364.0
Nin8g01543 . 147 507 GRAS Transcription Factor family AT1G66350 35.99 8.41e-69 229.0
Nin8g01618 . 72 714 GRAS Transcription Factor family AT2G37650 52.006 0.0 672.0
Nin8g01619 . 72 714 GRAS Transcription Factor family AT2G37650 52.006 0.0 672.0
Nin8g01621 . 72 714 GRAS Transcription Factor family AT2G37650 52.006 0.0 672.0
Nin8g02115 . 1 767 GRAS Transcription Factor family AT1G07530 48.096 0.0 672.0
Nin8g02419 . 311 349 GRAS Transcription Factor family AT3G50650 64.103 3.35e-10 54.3
Nin8g02591 . 60 490 GRAS Transcription Factor family AT5G48150 72.581 0.0 661.0
Nin9g01647 . 86 767 GRAS Transcription Factor family AT1G07530 47.688 0.0 601.0
Nin9g02144 . 180 415 GRAS Transcription Factor family AT1G55580 37.5 7.42e-38 135.0
Nin9g02576 . 33 640 GRAS Transcription Factor family AT5G52510 46.445 2.13e-151 449.0
Nin9g02683 . 35 170 GRAS Transcription Factor family AT2G01570 40.94 1.39e-19 82.4
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Nin GRAS 8.1e-83 CL0063 TF GRAS