AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nin5g01640 ATGGAATCCAAACCACCACCACCGCCACCGCCGCCGCCGTCGCTCCTCCGCCGTCTAATCAATTTCGACGCCGCCGTATCACTCCACCTCCACAATCTAACACAACCAATCCTCCCCCGTCCCTTCCTCAAATCCCTAGAAATCTCCGGCGACGGCCGCCTTTTCTTCCCCGTTCTCCTCTCCCTCCTCCTCTCCCCTCTCTCCAAAACCTCTCCTCTGCTCCTCGCTCTCCTCCTAAACCTCCTCATCGGATCTCTCCTCGATCTCCTCCTCGTCGGACTCATCAAACACCTCGTACGCCGTCCTCGTCCGGTCTACAACAAGCACATGTTCCTCACTTTCGCCGTCGACCACTGGTCCTTCCCAAGCGGCCACTCCTCCAGGGTTTGCTTTATCGCGACGTTGTTCTGCCTCTCCTCCGAGGATTTGATCCCCAACATTTTGATTCAATTGAGGGATTTGAAGCTTGATTTTATTAGGAATTCGGTCGGTTTGGATTTTGTGGTCGTGTTTGTTGTGGTTTGGGCGATGGTGACTTCGGTTTCTAGGGTTTTGCTCGGCCGGCATTTCGTGTTTGATGTTATCGCCGGAGCTTCGTTGGGTGTTGGTGAAGGAAGCTGGACCACTTTTGACTGA 636 54.25 MESKPPPPPPPPPSLLRRLINFDAAVSLHLHNLTQPILPRPFLKSLEISGDGRLFFPVLLSLLLSPLSKTSPLLLALLLNLLIGSLLDLLLVGLIKHLVRRPRPVYNKHMFLTFAVDHWSFPSGHSSRVCFIATLFCLSSEDLIPNILIQLRDLKLDFIRNSVGLDFVVVFVVVWAMVTSVSRVLLGRHFVFDVIAGASLGVGEGSWTTFD 211
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nin5g01640 211 Gene3D Phosphatidic acid phosphatase type 2-haloperoxidase 106 210 - -
Nin5g01640 211 PANTHER SPHINGOSINE-1-PHOSPHATE PHOSPHOHYDROLASE 3 204 - GO:0042392(PANTHER)
Nin5g01640 211 SUPERFAMILY Acid phosphatase-Vanadium-dependent haloperoxidase 10 207 IPR036938 -
Nin5g01640 211 SMART acid-phosph-2 76 209 IPR000326 -
Nin5g01640 211 Pfam PAP2 superfamily 78 202 IPR000326 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nin5g01640 K22904 presqualene diphosphate phosphatase [EC:3.1.3.-]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nin Nin-Chr5:31063802 Nin9g01553 Nin-Chr9:26419774 dispersed
Nin Nin-Chr2:39649356 Nin5g01640 Nin-Chr5:31063802 wgd