AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nin5g01729 ATGGCAGACACAGATTTCCACACCATTTCCAAGCCACAAAACCCACCTCCACAACTCCCTCTAAACCCCACCAAATTCTACACCCAATTCATCTACAAAGCCATCATGGTATCAGCCTTCCTGCTCCTACTCCCATTTCTACCTTCCCAAGCACCTGATTTCTTCAATGACACCCTCACCACCAGGATCTGGGAGCTCCTACAGCTCCTCTTCGTCGGAATCGCCGTCTCGTACGGGCTCTTCAGCAAGCGGAACGACGAGACCGAGAAAGAATCACACGGCTCGAAATTCGAGAACGCTCAGTCCTACGTCGCCGGGTTGCTCCAGGTCTCGTCGGTGTTCGATGACGATTCCGACAACTCCCCTGTTTCCGATGATAACAGCAAGGTTCAGACCTGGAACTCTCAGTATTACAGAGGTGAACCCATGGTAGTTGTAGCTCGAGAAAGCTCTGTTCTCGAAGAACAACATAGTAGTAGTAGTACTGTTATGTCCGGTTCCCAGACAATCGGAAACCCTCTTCTGCTCCCGCCTGTTCGGAGCTCGAGAAATGGAGTTTCCGAACAAGATGCAAGTCCCATTAGTAGGACGAATTCGAGATCGAATTCGATGCGGTTTTCCGGTGTGACGAGGAACGGGGATTTGTGGGGTGCGAGCTCGGAGGGTTTGGAGGGGAAGGTAGAGGAAGATGTCGTGTTTCGATCTCCGATTCCGTGGAGATCGAGGTCGGCGAGGATGGAGGTGAAGGAAGAAGATTTGGATGGTGCTCCGTTGTACCAACCATGGAAACCGTCGAGGAAAAACATGTCGGCTTGTTCCGCGTCCTTAACCTCGGAGTTGCAGGCCAAGAGTGTCGAGGATGTTGTGAAGAAAAAGCCTTCATACAAGTCTTCTTCGTTTCAGTCGATTCCGCCTCCTCCGCCGCCGCCTCCGCCGCCTCACAGAACATCGTCGGCGAACTACACTCGTACGAGGAGCAACAACCCGTTTGTCGGAAAGGAACTGAGGAGAAGCGTTACGAGTTTCGAAACAGAGGATTTCCCGAGCAGGGGAGAGCTCGATTTGGGGTTTAGAACCCGGAGTGCGAGTGCATTGATGGGGAAATCAGTCAGGACAGTGATGGGAAAGGGTTCGAATGTGGACGAGGTTGATAAGGATCAAATGAGGAACATGGACGAGGAAAATACTAGGCGAAATTACGAAGAATGTGACAAGAAAGTGGTTACGGAAACCGAGGATGAGTCCGAGGAGAGCGATGAGGATGAGGATGATAGAATGGAAGAGCTCCCCGAGAAGGATGAGAAGGTGGTTAAGGATGTTTGTAGTAGTGATACGGGTCCGGATGTCGATAAGAAAGCCGATGAGTTTATTGCGAAGTTTAGAGAGCAGATTAGGCTTCAGAGAATAGCGTCCATCAGAAGATCAACCGGGCAGGCACCGAAAACATTAATGAGGTAA 1458 50.82 MADTDFHTISKPQNPPPQLPLNPTKFYTQFIYKAIMVSAFLLLLPFLPSQAPDFFNDTLTTRIWELLQLLFVGIAVSYGLFSKRNDETEKESHGSKFENAQSYVAGLLQVSSVFDDDSDNSPVSDDNSKVQTWNSQYYRGEPMVVVARESSVLEEQHSSSSTVMSGSQTIGNPLLLPPVRSSRNGVSEQDASPISRTNSRSNSMRFSGVTRNGDLWGASSEGLEGKVEEDVVFRSPIPWRSRSARMEVKEEDLDGAPLYQPWKPSRKNMSACSASLTSELQAKSVEDVVKKKPSYKSSSFQSIPPPPPPPPPPHRTSSANYTRTRSNNPFVGKELRRSVTSFETEDFPSRGELDLGFRTRSASALMGKSVRTVMGKGSNVDEVDKDQMRNMDEENTRRNYEECDKKVVTETEDESEESDEDEDDRMEELPEKDEKVVKDVCSSDTGPDVDKKADEFIAKFREQIRLQRIASIRRSTGQAPKTLMR 485
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nin5g01729 485 MobiDBLite consensus disorder prediction 429 450 - -
Nin5g01729 485 MobiDBLite consensus disorder prediction 413 428 - -
Nin5g01729 485 MobiDBLite consensus disorder prediction 378 412 - -
Nin5g01729 485 PANTHER EXPRESSED PROTEIN 4 478 - -
Nin5g01729 485 MobiDBLite consensus disorder prediction 290 334 - -
Nin5g01729 485 MobiDBLite consensus disorder prediction 377 450 - -
Nin5g01729 485 Pfam Cotton fibre expressed protein 447 476 IPR008480 -
Nin5g01729 485 MobiDBLite consensus disorder prediction 317 334 - -
Nin5g01729 485 MobiDBLite consensus disorder prediction 182 206 - -
Nin5g01729 485 MobiDBLite consensus disorder prediction 300 316 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nin5g01729 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nin Nin-Chr3:33099532 Nin5g01729 Nin-Chr5:34723384 dispersed
Nin Nin-Chr5:34723384 Nin9g00477 Nin-Chr9:5215749 dispersed