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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nin5g01743 ATGGATATGAAATTGTTTGAGCCCAAGTCATTGGTTTCTATTTGTCCAAAGAGGATAATGCCTTCCAATCACTACACACCTTTCCTCCATTCTAGGTTCAATGTCTCTCCACCACATCCATGTTCTTGCAGAGGTACTTTCCCAGAGGCTACTTGTTTAAGTACTACACAGAGTGCTATGAGCCCTAGCTCTTTTGGGCATGAAAAAATGGCCATGGACACTTACACATATCGGTTTAGTGGATCGAATGGCGGAAACCCGAGTATTTATTTTAGGGAAAGGAGGGTTCTTGAGGCATTTGATGATGAGTATGGAGGAGTTGTGGTCAATCCAGAAAGACTCCCGTGGAACCCTAACGTATTCGCCTCTATACTTCGTTCCTCCCTTTCTCATTGGAAATTGAAGGGCAAAAAGGGAGTCTGGCTTAAGCTGCCTGTAGAGAAATGTGATCTTGTCCCTGTAGCAGTGAAGGAAGGATTTCATTACCACCATGCTGAAAGAGGATACGTGATGCTGACATATTGGATTCCCGAAGGACCTTGCATGCTTCCTGCAAATGCTTCACATCAAGTGGGAGTTGGGGGTTTTGTGATGAATGACAAAAATGAGGTGCTTGTTGTTCAAGAGAAACACTGTGCACCAGAATCCGTTGGCCTTTGGAAGTTACCAACTGGTTTTGTTCATGAGTCAGAAGAGATCTTCACGGGAGCTGTAAGAGAAGTTAAGGAAGAGACCGGAATCGATACTGAATTTGTGGAAGTTATAGCATTCAGGCATGCGCACAATGTGGCATTCGAGAAATCAGATTTGTTCTTCATCTGCATGTTGAAGCCGATTTCAAGTCGAATTGAAATTGATGACCTTGAGGTTCAAGCAGCCAAGTGGATGCCTTTAATGGAGTTCGTAGAACAACCTTTGATCCAAGGAGACAAAATGTTCAAGAAAATCATTGACATTTGCATCGCGAGGCTTGGGAAACGATACTGTGGGTTATCTGTCCATAAAGTGGTGTCAAAGTTCGACAACAGACTATCATCCTTGTACTACAACGTTGTTGACGATCAAAACATAGACTGTCAAAAACTTGTAGACGATTCTTGTGCGGCTCTGGATGCTTGA 1119 43.34 MDMKLFEPKSLVSICPKRIMPSNHYTPFLHSRFNVSPPHPCSCRGTFPEATCLSTTQSAMSPSSFGHEKMAMDTYTYRFSGSNGGNPSIYFRERRVLEAFDDEYGGVVVNPERLPWNPNVFASILRSSLSHWKLKGKKGVWLKLPVEKCDLVPVAVKEGFHYHHAERGYVMLTYWIPEGPCMLPANASHQVGVGGFVMNDKNEVLVVQEKHCAPESVGLWKLPTGFVHESEEIFTGAVREVKEETGIDTEFVEVIAFRHAHNVAFEKSDLFFICMLKPISSRIEIDDLEVQAAKWMPLMEFVEQPLIQGDKMFKKIIDICIARLGKRYCGLSVHKVVSKFDNRLSSLYYNVVDDQNIDCQKLVDDSCAALDA 372
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nin5g01743 372 CDD Nudix-Hydrolase-12 189 320 - -
Nin5g01743 372 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 170 186 IPR003293 -
Nin5g01743 372 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 246 269 IPR003293 -
Nin5g01743 372 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 274 298 IPR003293 -
Nin5g01743 372 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 186 204 IPR003293 -
Nin5g01743 372 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 148 166 IPR003293 -
Nin5g01743 372 PANTHER NUDIX HYDROLASE RELATED 91 354 IPR003293 GO:0035529(PANTHER)|GO:0047631(PANTHER)|GO:0051287(PANTHER)
Nin5g01743 372 FunFam nudix hydrolase 2 94 181 - -
Nin5g01743 372 ProSiteProfiles Nudix hydrolase domain profile. 188 318 IPR000086 -
Nin5g01743 372 SUPERFAMILY Nudix 156 321 IPR015797 -
Nin5g01743 372 Pfam NUDIX domain 189 308 IPR000086 -
Nin5g01743 372 FunFam Nudix hydrolase 8 190 328 - -
Nin5g01743 372 Pfam Nudix hydrolase domain 97 176 IPR040618 -
Nin5g01743 372 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 190 328 - -
Nin5g01743 372 Gene3D - 94 181 - -
Nin5g01743 372 ProSitePatterns Nudix box signature. 225 246 IPR020084 GO:0016787(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nin5g01743 K26956 ADP-ribose/NAD+ diphosphatase [EC:3.6.1.13 3.6.1.22]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nin Nin-Chr4:47970828 Nin5g01743 Nin-Chr5:35141786 dispersed
Nin Nin-Chr5:35141786 Nin8g01349 Nin-Chr8:21286989 dispersed
Nin Nin-Chr5:35141786 Nin6g02959 Nin-Chr6:45954356 transposed