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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nin5g01757 ATGGATCATTTGAGTGGCAGAATGGAAATTATGAATAACTCAGTTCAGGAATTTCAACAACAAAGCAGTGAAGAAGATGAGATGAACATGGTGGACTTGAGAAGAGGCCCTTGGACTGTTGAAGAAGATTTTACTCTCATCAATTACATAGCTCATCACGGTGAAGGCCGCTGGAATTCCCTCGCTCGCTGTGCTGGGTTAAAGAGAACCGGGAAGAGTTGTAGGTTAAGATGGTTGAATTACTTACGCCCCGATGTCCGTCGTGGTAACATCACCCTTGAAGAACAACTCTTGATTCTCGAACTTCATTCTCGTTGGGGCAATCGTTGGTCAAAGATCGCGCAACACTTGCCTGGAAGAACAGATAACGAGATCAAGAATTACTGGAGAACAAGAGTTCAGAAACATGCCAAGCAACTCAAATGCGACGTGAATAGCAAGCAATTCAAAGACACGATGCGTTACTTATGGATGCCTCGGCTAATGGAGCGTATCCAGGCCTCATCAGCCGCCACCACCACCGCCACAACAACCGCTACTGGTGGCTCATCCTCCTCCACCACCACCTACCCACCAAGCCAAAACAACTTGGACAATATGGGAAATTCCAATTGTAGCCAAGTTGTATTGCCTGTGCCACAGGCCAATAGCTGTAGTCAGCAAAACAATCAAAGTAGCAACAACATGTGCAACAGCTACGGAAATACCCAAATTACCCCTAGCTACACGCCGGAGAACTCGAGCACCACCGCCGTGTCCCCGGTGTCCGATCTCACCGACTGTTATTATCCGGTCAGTCAAGATGACTTTTTCCAGGCCAACAACCAAAACCAGCTTGGATACCCAGAATCTCTAATTAGCCCCTCTGCCGGTTACTATAACCAAGGGTTGGATTTCCAAACCGTGGAGCAAAACAATCCCTGGCCGTCCGATGGTGGGGACTTATCGGACAATTTATGGAATGTTGAGGACATCTGGTTCTTACAACAGAGTTTCAACCACAGCATGTGA 1011 47.38 MDHLSGRMEIMNNSVQEFQQQSSEEDEMNMVDLRRGPWTVEEDFTLINYIAHHGEGRWNSLARCAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLMERIQASSAATTTATTTATGGSSSSTTTYPPSQNNLDNMGNSNCSQVVLPVPQANSCSQQNNQSSNNMCNSYGNTQITPSYTPENSSTTAVSPVSDLTDCYYPVSQDDFFQANNQNQLGYPESLISPSAGYYNQGLDFQTVEQNNPWPSDGGDLSDNLWNVEDIWFLQQSFNHSM 336
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nin5g01757 336 CDD SANT 108 131 IPR001005 -
Nin5g01757 336 SMART sant 87 135 IPR001005 -
Nin5g01757 336 SMART sant 34 84 IPR001005 -
Nin5g01757 336 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 24 326 IPR044676 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0043565(PANTHER)|GO:0043565(InterPro)
Nin5g01757 336 Pfam Myb-like DNA-binding domain 88 131 IPR001005 -
Nin5g01757 336 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Nin5g01757 336 SUPERFAMILY Homeodomain-like 32 129 IPR009057 -
Nin5g01757 336 FunFam Myb transcription factor 35 87 - -
Nin5g01757 336 Gene3D - 36 87 - -
Nin5g01757 336 ProSiteProfiles Myb-like domain profile. 30 82 IPR001005 -
Nin5g01757 336 Gene3D - 92 155 - -
Nin5g01757 336 FunFam MYB transcription factor 92 155 - -
Nin5g01757 336 CDD SANT 37 82 IPR001005 -
Nin5g01757 336 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Nin5g01757 336 MobiDBLite consensus disorder prediction 168 197 - -
Nin5g01757 336 Coils Coil 1 21 - -
Nin5g01757 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 82 IPR017930 -
Nin5g01757 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 137 IPR017930 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nin5g01757 K09422 transcription factor MYB, plant
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nin Nin-Chr1:63676507 Nin5g01757 Nin-Chr5:35561971 dispersed
Nin Nin-Chr5:35561971 Nin7g02820 Nin-Chr7:44512599 dispersed
Nin Nin-Chr5:35561971 Nin4g00425 Nin-Chr4:3893909 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Nin1g00266 . 1 131 MYB Transcription Factor family AT5G14340 77.273 4.28e-76 229.0
Nin1g00735 . 19 436 MYB Transcription Factor family AT1G14350 56.838 5.54e-169 481.0
Nin1g00791 . 97 219 MYB Transcription Factor family AT1G69560 87.805 9.81e-76 239.0
Nin1g00808 . 1 326 MYB Transcription Factor family AT5G15310 50.532 3.37e-109 321.0
Nin1g00809 . 6 170 MYB Transcription Factor family AT5G15310 73.333 3.48e-84 253.0
Nin1g01250 . 25 282 MYB Transcription Factor family AT4G38620 46.154 7.01e-73 223.0
Nin1g01654 . 1 173 MYB Transcription Factor family AT1G06180 50.289 2.81e-55 176.0
Nin1g01657 . 1 159 MYB Transcription Factor family AT4G34990 50.61 2.46e-52 169.0
Nin1g01664 . 1 349 MYB Transcription Factor family AT4G21440 50.954 1.21e-102 304.0
Nin1g02814 . 18 163 MYB Transcription Factor family AT1G68320 78.082 3.22e-83 250.0
Nin1g02891 . 72 681 MYB Transcription Factor family AT3G18100 47.393 0.0 578.0
Nin1g02941 . 3 145 MYB Transcription Factor family AT4G38620 59.355 2.07e-62 192.0
Nin2g00178 . 1 277 MYB Transcription Factor family AT1G08810 54.87 3.53e-101 297.0
Nin2g00664 . 1 351 MYB Transcription Factor family AT5G62470 49.25 5.88e-110 324.0
Nin2g00755 . 1 314 MYB Transcription Factor family AT3G28470 35.866 1.66e-47 160.0
Nin2g00872 . 81 414 MYB Transcription Factor family AT4G18770 45.304 3.75e-87 271.0
Nin2g00919 . 1 129 MYB Transcription Factor family AT5G26660 85.271 9.69e-79 247.0
Nin2g01056 . 3 107 MYB Transcription Factor family AT5G67300 79.048 1.36e-57 184.0
Nin2g01581 . 1 365 MYB Transcription Factor family AT1G34670 47.382 1.34e-97 291.0
Nin2g02156 . 3 201 MYB Transcription Factor family AT1G17950 53.883 3.76e-68 211.0
Nin2g02998 . 1 127 MYB Transcription Factor family AT3G13890 81.102 1.12e-69 222.0
Nin3g00230 . 1 249 MYB Transcription Factor family AT2G31180 48.561 1.65e-85 254.0
Nin3g00779 . 1 159 MYB Transcription Factor family AT2G47460 74.074 4.75e-77 243.0
Nin3g00910 . 12 204 MYB Transcription Factor family AT3G12720 65.816 4.07e-83 256.0
Nin3g01274 . 1 327 MYB Transcription Factor family AT5G16600 52.439 4.18e-101 297.0
Nin3g01478 . 1 362 MYB Transcription Factor family AT1G34670 46.335 8.71e-96 288.0
Nin3g02043 . 1 187 MYB Transcription Factor family AT5G57620 74.603 2.01e-93 280.0
Nin3g02580 . 2 245 MYB Transcription Factor family AT1G17950 47.727 4.23e-74 224.0
Nin4g00198 . 1 263 MYB Transcription Factor family AT5G14340 47.157 4.94e-79 239.0
Nin4g00301 . 1 263 MYB Transcription Factor family AT5G14340 52.768 4.29e-84 251.0
Nin4g00416 . 212 340 MYB Transcription Factor family AT4G18770 65.116 4.55e-60 196.0
Nin4g00425 . 17 175 MYB Transcription Factor family AT3G27810 74.843 3.27e-80 240.0
Nin4g00558 . 10 316 MYB Transcription Factor family AT3G28470 41.768 1.70e-51 176.0
Nin4g00621 . 1 316 MYB Transcription Factor family AT3G47600 49.454 8.87e-108 318.0
Nin4g00666 . 1 326 MYB Transcription Factor family AT5G15310 52.261 7.60e-118 343.0
Nin4g00800 . 26 228 MYB Transcription Factor family AT3G30210 55.814 4.45e-68 209.0
Nin4g01227 . 1 320 MYB Transcription Factor family AT4G37260 47.945 5.13e-97 289.0
Nin4g01463 . 1 124 MYB Transcription Factor family AT3G49690 90.323 4.39e-82 251.0
Nin4g01572 . 7 148 MYB Transcription Factor family AT1G66370 64.189 4.78e-63 196.0
Nin4g01745 . 253 358 MYB Transcription Factor family AT2G37630 50.943 3.41e-28 110.0
Nin4g02383 . 1 276 MYB Transcription Factor family AT4G38620 41.935 6.82e-62 196.0
Nin4g02549 . 1 117 MYB Transcription Factor family AT5G57620 82.906 4.50e-72 223.0
Nin5g00114 . 1 185 MYB Transcription Factor family AT5G57620 69.355 1.99e-88 264.0
Nin5g00794 . 1 124 MYB Transcription Factor family AT2G36890 70.149 2.01e-66 209.0
Nin5g00969 . 1 337 MYB Transcription Factor family AT1G63910 45.869 2.42e-85 261.0
Nin5g01218 . 51 245 MYB Transcription Factor family AT5G02320 64.216 7.40e-83 262.0
Nin5g01483 . 43 282 MYB Transcription Factor family AT4G12350 48.249 2.43e-65 204.0
Nin5g01757 . 5 297 MYB Transcription Factor family AT5G49620 52.924 2.95e-93 278.0
Nin5g01960 . 1 159 MYB Transcription Factor family AT2G47460 69.182 7.05e-76 236.0
Nin5g02314 . 2 958 MYB Transcription Factor family AT5G11510 38.182 0.0 619.0
Nin5g02542 . 1 115 MYB Transcription Factor family AT5G49330 73.043 4.71e-58 191.0
Nin6g00156 . 80 119 MYB Transcription Factor family AT3G13540 60.0 1.29e-12 61.2
Nin6g00157 . 69 108 MYB Transcription Factor family AT5G52600 57.5 4.53e-13 60.1
Nin6g00395 . 1 288 MYB Transcription Factor family AT3G61250 56.393 3.02e-113 327.0
Nin6g01011 . 7 297 MYB Transcription Factor family AT3G60460 48.243 8.30e-86 258.0
Nin6g01281 . 52 83 MYB Transcription Factor family AT3G09230 75.0 1.25e-10 54.7
Nin6g01381 . 7 550 MYB Transcription Factor family AT3G11440 39.474 3.49e-110 337.0
Nin6g01599 . 3 340 MYB Transcription Factor family AT3G08500 44.382 7.47e-74 229.0
Nin6g01817 . 5 115 MYB Transcription Factor family AT4G28110 61.261 5.76e-49 165.0
Nin6g02481 . 1 349 MYB Transcription Factor family AT4G21440 54.047 1.96e-118 345.0
Nin6g02498 . 8 199 MYB Transcription Factor family AT2G31180 44.175 1.21e-51 166.0
Nin6g02500 . 12 132 MYB Transcription Factor family AT3G23250 63.636 5.62e-52 166.0
Nin6g02501 . 11 125 MYB Transcription Factor family AT1G18710 58.261 4.33e-46 157.0
Nin6g02502 . 4 214 MYB Transcription Factor family AT3G23250 46.919 1.07e-50 169.0
Nin6g02503 . 1 123 MYB Transcription Factor family AT4G28110 56.911 9.20e-49 162.0
Nin7g00040 . 1 208 MYB Transcription Factor family AT4G38620 58.768 2.52e-82 249.0
Nin7g00268 . 1 119 MYB Transcription Factor family AT5G57620 88.235 3.31e-77 239.0
Nin7g00599 . 12 190 MYB Transcription Factor family AT3G13540 59.574 6.18e-71 217.0
Nin7g01135 . 1 553 MYB Transcription Factor family AT3G11440 36.0 1.30e-96 303.0
Nin7g01614 . 6 116 MYB Transcription Factor family AT3G53200 72.973 8.88e-56 175.0
Nin7g01642 . 1 119 MYB Transcription Factor family AT5G57620 86.555 3.54e-77 239.0
Nin7g01915 . 3 339 MYB Transcription Factor family AT3G08500 43.305 3.16e-74 231.0
Nin7g02633 . 13 140 MYB Transcription Factor family AT3G13540 85.271 2.77e-77 235.0
Nin7g02820 . 4 243 MYB Transcription Factor family AT4G13480 52.869 7.63e-79 237.0
Nin8g01040 . 42 128 MYB Transcription Factor family AT5G16770 64.773 3.73e-31 119.0
Nin8g01041 . 89 158 MYB Transcription Factor family AT1G66230 43.421 2.42e-13 65.1
Nin8g01428 . 1 171 MYB Transcription Factor family AT5G56110 87.719 1.47e-112 327.0
Nin8g01530 . 1 172 MYB Transcription Factor family AT1G79180 62.644 2.37e-75 227.0
Nin8g01607 . 19 498 MYB Transcription Factor family AT5G02320 45.42 2.73e-132 395.0
Nin8g01609 . 298 367 MYB Transcription Factor family AT2G37630 70.0 6.91e-25 93.2
Nin8g01610 . 1 229 MYB Transcription Factor family AT2G37630 64.135 1.17e-92 275.0
Nin8g01962 . 1 318 MYB Transcription Factor family AT1G09540 46.281 4.50e-87 266.0
Nin8g01995 . 1 318 MYB Transcription Factor family AT1G09540 45.833 1.53e-87 268.0
Nin8g02054 . 11 419 MYB Transcription Factor family AT5G58850 36.056 8.74e-78 249.0
Nin8g02091 . 8 203 MYB Transcription Factor family AT3G46130 61.033 4.05e-78 235.0
Nin9g00849 . 1 837 MYB Transcription Factor family AT1G09770 73.484 0.0 1208.0
Nin9g01315 . 1 490 MYB Transcription Factor family AT2G32460 36.484 2.73e-76 246.0
Nin9g01355 . 285 680 MYB Transcription Factor family AT3G18100 46.42 1.86e-108 345.0
Nin9g01531 . 52 365 MYB Transcription Factor family AT3G55730 52.698 2.30e-96 291.0
Nin9g01970 . 4 110 MYB Transcription Factor family AT3G50060 71.028 6.27e-54 174.0
Nin9g02069 . 1 115 MYB Transcription Factor family AT3G23250 71.304 8.36e-61 191.0
Nin9g02122 . 5 143 MYB Transcription Factor family AT1G16490 62.59 1.81e-60 189.0
Nin9g02507 . 6 210 MYB Transcription Factor family AT5G52260 50.926 1.13e-61 194.0
Nin9g02508 . 30 193 MYB Transcription Factor family AT5G52260 50.296 3.66e-47 155.0
Nin9g02509 . 1 279 MYB Transcription Factor family AT3G61250 49.11 2.19e-88 266.0
Nin9g02910 . 1 211 MYB Transcription Factor family AT5G16770 63.677 3.89e-93 277.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Nin Myb_DNA-binding 3.2e-15 CL0123 TF MYB