AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nin6g00884 ATGCTGGAAATGGAATCAACAAAGCCACCACAAATCACCGAAATGTTTCAGAAATTCGCAATCGCATTCAAAGCCAAAACCTTCGAGTTCTTCGCCGAAGACGACGCCGACGCCACCTCCGCCGCCGCCACCGACACCGAGGACGGCTTCTCCCTCCTCGACTCCGCCGAAGACTTCATCCCCGACCAGAAAGTCATCATCATCAAACCCGACAACCCAATTCAACCCTTCAATCTCCAGTTCGGAGAGTACCTGATTTCCTCGCTATTCGCTACGGTCTCCTCGTTCGAGGCCTCGTATCTTCAGTTGCAGACGGCCCATGTCCCGTTCGATGAGGAAGGGATCAAGACGAGTGATCGAGCTTTGGTTTCGCAGCTTCGGAAAGTACATGATTTGAGGCAGTTGTATATGGATTCTCGGAAGAACCCTAATTTCAAAGCTGATTTCTCTGTTGGGTCTTGCCTCGAAGCTCGGGTACAGGAGAATCAGAACAAGCTTCGTGCGTTGGAGACTATGTTTAATCGATTACAGTCCGACATTGATGTTAAGGATGATAAGGTTTCGAGTTTGAGAAAGAGGTTGGGTGAAATCGAACAATCAAACTCGAAAATGTCGATGAAAATGTCGAGGATTTTGAAGAACGAATCGAATTCCCCAATTCCAACTGGGGTTTTGCTGACGATTCGGGTTTTTGATTCTATGTTGCGTGAAACTTGTCGATCCACCCATCGTTTTACTAAGTTGTTGATTGAGTTAATGAAGAGAGCTGGTTGGGATTTGGATTTAGCAGCTGATTTTGTTCATCCCAATGTTGAGTATGCGAAAATCGGGCATAAACGGTATGCATTCTTGTCTTATGTTTGTTTAGGTATGTTTCGAGGTTTTGATTCCGAAAGTTTCGGTTTGCTGGAAAACGATGAATCTCTGTGCAATGGTTGTGATAATAATGGTTTGAGTAAAAGGAAGAATGATTCTTTGAAGCAATTATTCGAACATGTGGCGGTCAATCCAGTGGAAACCTTGAATATAAACCCTACCTGTGCTTTTTCGAAATTCTGTGAATTAAAGTATGAAGAACTAGTGCACCCTACAATGGAATCGTCGTTGTTTCGGAATATGGATAGAAATGAAGCTGTTCTGGATTCGTGGAGATCGTTGAGTGTGTTCTACGAGGCGTTTGTTAATATGTCTAGCTCAATATGGTTACTTCATAAGCTGGCATATGCATTTGATCCTGCAGTTGAGATATTCCAGGTAGAACAAGGGGCGGATTTTTCGATGATTTACATGGAAGATGTTACGAAGAGAAGTGTATTGTTAGGCAAGAGCAGGCCAAAGGTCGGGTTTACAGTTGTACCAGGATTTAAGGTTGGAACAACAGTCATTCAATCCCAGGTCTATCTAACTTAA 1410 43.76 MLEMESTKPPQITEMFQKFAIAFKAKTFEFFAEDDADATSAAATDTEDGFSLLDSAEDFIPDQKVIIIKPDNPIQPFNLQFGEYLISSLFATVSSFEASYLQLQTAHVPFDEEGIKTSDRALVSQLRKVHDLRQLYMDSRKNPNFKADFSVGSCLEARVQENQNKLRALETMFNRLQSDIDVKDDKVSSLRKRLGEIEQSNSKMSMKMSRILKNESNSPIPTGVLLTIRVFDSMLRETCRSTHRFTKLLIELMKRAGWDLDLAADFVHPNVEYAKIGHKRYAFLSYVCLGMFRGFDSESFGLLENDESLCNGCDNNGLSKRKNDSLKQLFEHVAVNPVETLNINPTCAFSKFCELKYEELVHPTMESSLFRNMDRNEAVLDSWRSLSVFYEAFVNMSSSIWLLHKLAYAFDPAVEIFQVEQGADFSMIYMEDVTKRSVLLGKSRPKVGFTVVPGFKVGTTVIQSQVYLT 469
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nin6g00884 469 Coils Coil 159 179 - -
Nin6g00884 469 Pfam Plant protein of unknown function (DUF641) 80 206 IPR006943 -
Nin6g00884 469 PANTHER PROTEIN GRAVITROPIC IN THE LIGHT 1 14 468 IPR040225 GO:0009639(InterPro)|GO:0009959(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nin6g00884 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nin Nin-Chr3:10399352 Nin6g00884 Nin-Chr6:10245005 dispersed
Nin Nin-Chr6:10245005 Nin8g00566 Nin-Chr8:13132725 dispersed