AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nin6g00898 ATGTTTGATCAATCATCTTCAAGAAATGCTGTACCAGAGTGGCTAGAGTCACTATTGTGTGAGAAATTCTTCAATGCTTGCATAATTCATGAAGATGCAAAGAAGAATGAGAAGAACATCTTTTGTTTGGATTGCTGTGAAAGTATCTGCCCTCACTGCTTATCCCCACATAGATCTCATCGTCTCCTACAGGTAAGAAGGTATGTGTATCATGATGTGATTAGGCTTGGTGATGCTGAAAAACTGATGGATTGTTCTCATGTTCAAGGGTACACTACAAATAATGCAAAAGTGGTGTTCTTAAACCCAAGGCCACAGAACAGAGGAATTAGGAACTCAAACAACATCTGCATCACCTGTGACAGAGCTCTGCAAGACCCATACCTCTTTTGTTCAATTTCCTGCAAGGTCAACCACATACAGAAAAGCGGTGAGAATTTGTCCAACTACATGTACGATTGTGAGATTCTGACCCTGCCTGAACCGGGCTCGGATGACGGTTTAATGACGCCGGATTCTGTGCTCGAGCCGTTCGGTTCGTTGAGGACGTCCTCCGGTTCGAGTGGCACCAGCGGCGGCGAGGTGGGTTGCAGGACGGTGGGGTGCACGGCGGCGACGACAGATGTTGTGAGGAAGAAGCGTAGTACCTTGTCGGCAATTCGGTCGGCGGCGGCGGCGTGTAGGCCCGCCTTATACGCGCCGGTGTCGGAAGTTCCATCCCGGTGCCGGAAAGGCATGCCACGGCGGTCGCCGCTCCATTGA 762 49.74 MFDQSSSRNAVPEWLESLLCEKFFNACIIHEDAKKNEKNIFCLDCCESICPHCLSPHRSHRLLQVRRYVYHDVIRLGDAEKLMDCSHVQGYTTNNAKVVFLNPRPQNRGIRNSNNICITCDRALQDPYLFCSISCKVNHIQKSGENLSNYMYDCEILTLPEPGSDDGLMTPDSVLEPFGSLRTSSGSSGTSGGEVGCRTVGCTAATTDVVRKKRSTLSAIRSAAAACRPALYAPVSEVPSRCRKGMPRRSPLH 253
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nin6g00898 253 Pfam PLATZ transcription factor 66 137 IPR006734 -
Nin6g00898 253 ProSiteProfiles Zinc finger B-box type profile. 27 65 IPR000315 GO:0008270(InterPro)
Nin6g00898 253 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 6 252 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nin6g00898 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nin Nin-Chr3:29103244 Nin6g00898 Nin-Chr6:10335611 dispersed
Nin Nin-Chr4:41981918 Nin6g00898 Nin-Chr6:10335611 dispersed
Nin Nin-Chr6:10335611 Nin9g00026 Nin-Chr9:315382 dispersed
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Nin PLATZ 9.1e-27 No_clan TF PLATZ