AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nin6g00901 ATGGCAACTCCACTGAATGTCGCGGTGGTCGGAGCCGGCGTCTCCGGCATCCTCGCCGCCCGTGAGCTCCGGAGGGAAGACCACCGGGTCACCGTATTCGAAAAATCCAACCGACTCGGTGGAACATGGGTTTACGATCCGCGAGCCGAATCCGACGAGCTCGGGCTCGACCCGCACCGAGACATCGTCCATAGCAGCCTCTACGAGTCACTCCGTACGAATCTACCTCGGCAACTCATGGGTTTCTCGGATTTCGAATTTGAAGGCAGAGAATACGGGGATCCGAGGTTGTTTCCCGGGCACGAGGAGGTGCTCAGGTTTTTGGAGGATTTTGCGGCGGAGTTCGGAGTGGGTGGATTGATTCGGTTCGGTGCGGAAGTGGTTCGGGTTGAGCGAGTTGACTCGGGGAGTGGTGGGTATGTGGTTGAGTCGAGGGCGAGTGGAGTGAGTTCGGAGGAGGTTTTTGATGCTGTTGTGGTTTGTAGTGGTCACCATACTGAACCGAGACTAGCTTCTGATATTCCAGGGATTGGGGAATGGACTAGAAAGCAGGCGCATAGCCACAACTACCGTGTCCCCGAACCATTCAGACACCAGGTTGTAGTTATGATCGGGAGTGGACCTAGCGCATATGACATTTCTAGAGAAATTGCATCGGTTGCTAAAGAAGTTCATCTTTCATCAAGATCTCCAAACGTTAAGGTCACAAAACTGGATAAATATAACAATCTATGGCAGAATTCCAAGATAGAATGTGTTTGTGAAGATGGTACAGTGACGTTCCAGGGTGGATTCTCTGTTGAAGCAGATGTTATTTTTCACTGTACCGGGTACAAATTCCATTTTCCATTTCTCAGAACAAATGGAATTCTTGGTGTCGAGGACAACCGTGTTGGGCCATTATACAAGCACATCTTTCCCCCTCAACTTGCTCCTAGACTCTCGTTCGTGGGGTTAGCCTATAATCAGGGTATCCTGTTTCGGGTGTTTGAGTTGCAATCAAAATGGATAGCACAAACATTGTCCGGTAAGATTCTTCTGCCTTCTGAGGATGAGATGTTGGATGATGTTAACGAATACTATCGGCAAATGGAGGAACAAGGACTCCCCAAGCATTACACTCATTCTCTGTTCTTTGAGTTTGATTATGTGGACTGGTTGGCGTCTCAACTTGGGTTGGAAGTGGAAGACCGGTTTAGAGACATCGTCGGAGAGCTACTGAAGCGGTACATTTCCGACCATGACGGATTCAGGGATGCAATTGATATCGAATTTGCAAAATAA 1284 49.14 MATPLNVAVVGAGVSGILAARELRREDHRVTVFEKSNRLGGTWVYDPRAESDELGLDPHRDIVHSSLYESLRTNLPRQLMGFSDFEFEGREYGDPRLFPGHEEVLRFLEDFAAEFGVGGLIRFGAEVVRVERVDSGSGGYVVESRASGVSSEEVFDAVVVCSGHHTEPRLASDIPGIGEWTRKQAHSHNYRVPEPFRHQVVVMIGSGPSAYDISREIASVAKEVHLSSRSPNVKVTKLDKYNNLWQNSKIECVCEDGTVTFQGGFSVEADVIFHCTGYKFHFPFLRTNGILGVEDNRVGPLYKHIFPPQLAPRLSFVGLAYNQGILFRVFELQSKWIAQTLSGKILLPSEDEMLDDVNEYYRQMEEQGLPKHYTHSLFFEFDYVDWLASQLGLEVEDRFRDIVGELLKRYISDHDGFRDAIDIEFAK 427
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nin6g00901 427 Gene3D - 7 419 IPR036188 -
Nin6g00901 427 SUPERFAMILY FAD-NAD(P)-binding domain 247 411 IPR036188 -
Nin6g00901 427 SUPERFAMILY FAD-NAD(P)-binding domain 1 233 IPR036188 -
Nin6g00901 427 Pfam Flavin-binding monooxygenase-like 6 232 IPR020946 GO:0004499(InterPro)|GO:0050660(InterPro)|GO:0050661(InterPro)
Nin6g00901 427 Pfam Flavin-binding monooxygenase-like 249 387 IPR020946 GO:0004499(InterPro)|GO:0050660(InterPro)|GO:0050661(InterPro)
Nin6g00901 427 PRINTS Flavin-containing monooxygenase (FMO) signature 185 199 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Nin6g00901 427 PRINTS Flavin-containing monooxygenase (FMO) signature 262 289 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Nin6g00901 427 PRINTS Flavin-containing monooxygenase (FMO) signature 5 21 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Nin6g00901 427 PRINTS Flavin-containing monooxygenase (FMO) signature 155 171 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Nin6g00901 427 PRINTS Flavin-containing monooxygenase (FMO) signature 311 328 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Nin6g00901 427 PRINTS Flavin-containing monooxygenase (FMO) signature 212 227 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Nin6g00901 427 PRINTS Flavin-containing monooxygenase (FMO) signature 328 341 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Nin6g00901 427 PANTHER DIMETHYLANILINE MONOOXYGENASE 6 395 IPR050346 -
Nin6g00901 427 PIRSF FMO 243 399 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Nin6g00901 427 PIRSF FMO 4 247 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Nin6g00901 427 Gene3D - 173 275 IPR036188 -
Nin6g00901 427 FunFam Flavin-containing monooxygenase 173 275 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nin6g00901 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nin Nin-Chr6:10367701 Nin7g01404 Nin-Chr7:30143106 dispersed
Nin Nin-Chr6:10367701 Nin9g00259 Nin-Chr9:2499885 transposed