AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Nin6g00909 | ATGAAGGGGATGCCCTTACCCTTTGATTTTGAGGGGAAGGGGGTGTTTTTGGGTTTGGATTCATCACAACAAGAATCACAATCACCATTTTTGCCACCATTTTGTTCTGAAAATTACAAATTGTTTCTGGGTTGTGGAGATAATAGTCATCAGATTCTTCTCAGTGAGCCTAATTCTGTGCTGGATAATATAAGCAGTAGTCCAAGCCCTCCTGCTTCAACTTCAACGCTGTCTTCTTCTTTCGGCGGCGGCGGCGGCGGTGGTGGTGGCGGAAGAGGTGGGTCTTGTTCTACCGACGGAGGTGTGGCGGCGGTTTCTGGAAACCCCCCTTCTCAGAAGTGGCCGCCGGAAAATCAAGAAACCGCTAGTTCTAATGTGGGTGCGGCCGAGCTCCAGCCTTTTCCGCTCGAGATCGCCGGTGGCGCGGCCACGGCGGGTCCGGAGAAATGTGGGTTAGGAGGGATGGAGGATTGGGAGAGTGTCTTGTCGGAATCTGTCGCCGCGTCGCCCGGACAAGAACAGAGTATACTACGTTGGATCATGGGAGATGTTGAAGACCCTAGTATGGGTTTGAACAAGGTTCTTCAACTCACCGGCGGCGGCGGCGGCGGCGGTGGTGGTGGGGCGGGGGATTTTGAATTTAGTGGTGGATTTGGGGTTGTGGATCAAGGGTTTGGGTTGGATTCTAACAACCCAATTGGAGCAAATTTGATGAATTCAGTGAACCCTTCTTCATCTTCATCACAATTTGGTGCCCACAAAGTAAGCTCAAATCCTCAGTTTTTCCTTAAAAGCCCTCAATCCCAGTTTTTCCCAGTTTCTCAGACCAATTTGAATCAATCTCAAGCAATCCCATTTGAATCAAAACCACAGATTTTCACTCCCCAAGTGCTAATCAACCAGCACCAAGCTCAAACCCCACAAAATCCTGCCTTTTTCCTGCCATTGCCATACAACCAAGCTCACCAAGACCAGCTAATCCCACCACAGCCCAAGAGGCACAATCCAGGCACACTCGAATCGCCGAAAAACCCGTTTCTTGATCCGGGTTTAATCCCAAACCAGGTTCAGTTCCTTCCTCCATATCTGCAGAGATCATCCCCTCAGTCAATGGTTGCTTCCAAGAAAATGGCTATGGTGGATGAGTTAGGGTCAAACCCTAACCCTAATCCTAACCAGCAAGGGATCATAGACCAGCTATACAAGGCGGCAGAATTGGTCCAGTCGGGGAACAATCCGGTACTCGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTTTCTCCCATTGGTAAGCCTTTCTATAGGGCTGCTTTTTATTTCAAGGAAGCTCTTCAATTACTAGTGCATTCAATTGTCAACAATATGAATCCCCAGACAAGTAATAGTGCCACCAATTTTTCGCCGTTTAGCTTGATCTTCAAGATTGGTGCTTACAAATCGTTCTCTGAGATTTCGCCCTTCATCCAGTTTGCGAATTTTACTTGTAACCAAGCCCTGCTTGAGTCCCTGGATGGGTTTGATCAGATTCATATAATTGATTTCGATATTGGGTATGGTGGGCAATGGGCTTCTCTTATGCAGGAGCTTGCTCTGAGGAGCAATGGCGCTCCCTCGCTTAAAATCACCGCCTTTGCTTCACCGTCCACTCATGATCAGCTCGAGCTTGGACTAACCCGAGAGAATTTGATCCATTTCGCGAGTGAGATCAATGTGGGATTCGAATTTGAGATTGTGAGCCTTGATGTGCTTACCTCTTCTTCATGGTCATTGCCCTTTCACTTATCGGAGAATGAGGCGATTGCAGTGAATCTCCCCATAAATTCGTTCTCAAACTACCAAGTACCGCTCCCTCTTGTTCTTCGCTTTGTCAAGAATCTGTCTCCGAAGATTATAGTCTCAGTGGATAGAGGTTGTGACCGGACTGACCTCCCGTTTTCCAACCATGTGATCCACGCGTTACAATCCTACTCCAACCTTCTCGAGTCACTTGATGCTGTGAACATGAACCTAGACGTGTTGCAAAAGATTGAACGGTTTCTGTTCCAACCGAGCATAGAGAAGATCATAACAGGGCGGTATCGCTTCCCTGAGAAGACGCAGCATTGGAGGAACCTCTTTCTGTCATCAGGCTTTTCGCCATTGACCTTGAGCAATTTCACAGAGTCTCAAGCCGAGTGCGTGGTGAAGAGGACGCCTGTTCGTGGATTCCATGTCGAGAAAAGACAGTCCTCACTTGTTCTATGCTGGCAAAGAAGGGAACTCGTTTCTGCATCGGCTTGGAGGTGCTGA | 2292 | 48.43 | MKGMPLPFDFEGKGVFLGLDSSQQESQSPFLPPFCSENYKLFLGCGDNSHQILLSEPNSVLDNISSSPSPPASTSTLSSSFGGGGGGGGGGRGGSCSTDGGVAAVSGNPPSQKWPPENQETASSNVGAAELQPFPLEIAGGAATAGPEKCGLGGMEDWESVLSESVAASPGQEQSILRWIMGDVEDPSMGLNKVLQLTGGGGGGGGGGAGDFEFSGGFGVVDQGFGLDSNNPIGANLMNSVNPSSSSSQFGAHKVSSNPQFFLKSPQSQFFPVSQTNLNQSQAIPFESKPQIFTPQVLINQHQAQTPQNPAFFLPLPYNQAHQDQLIPPQPKRHNPGTLESPKNPFLDPGLIPNQVQFLPPYLQRSSPQSMVASKKMAMVDELGSNPNPNPNQQGIIDQLYKAAELVQSGNNPVLAQGILARLNHQLSPIGKPFYRAAFYFKEALQLLVHSIVNNMNPQTSNSATNFSPFSLIFKIGAYKSFSEISPFIQFANFTCNQALLESLDGFDQIHIIDFDIGYGGQWASLMQELALRSNGAPSLKITAFASPSTHDQLELGLTRENLIHFASEINVGFEFEIVSLDVLTSSSWSLPFHLSENEAIAVNLPINSFSNYQVPLPLVLRFVKNLSPKIIVSVDRGCDRTDLPFSNHVIHALQSYSNLLESLDAVNMNLDVLQKIERFLFQPSIEKIITGRYRFPEKTQHWRNLFLSSGFSPLTLSNFTESQAECVVKRTPVRGFHVEKRQSSLVLCWQRRELVSASAWRC | 763 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Nin6g00909 | 763 | ProSiteProfiles | GRAS family profile. | 387 | 762 | IPR005202 | - | |
| Nin6g00909 | 763 | MobiDBLite | consensus disorder prediction | 101 | 125 | - | - | |
| Nin6g00909 | 763 | Pfam | GRAS domain family | 397 | 762 | IPR005202 | - | |
| Nin6g00909 | 763 | PANTHER | OSJNBA0084A10.13 PROTEIN-RELATED | 378 | 761 | IPR005202 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER) | |
| Nin6g00909 | 763 | MobiDBLite | consensus disorder prediction | 62 | 125 | - | - | |
| Nin6g00909 | 763 | MobiDBLite | consensus disorder prediction | 62 | 82 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Nin6g00909 | K27747 | protein hairy meristem |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Nin | Nin-Chr4:38054854 | Nin6g00909 | Nin-Chr6:10490583 | dispersed | |
| Nin | Nin-Chr4:38054854 | Nin6g00909 | Nin-Chr6:10490583 | dispersed | |
| Nin | Nin-Chr5:26779496 | Nin6g00909 | Nin-Chr6:10490583 | dispersed | |
| Nin | Nin-Chr6:10490583 | Nin4g00083 | Nin-Chr4:875105 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Nin1g01548 | . | 2 | 409 | GRAS Transcription Factor family | AT3G49950 | 45.775 | 4.13e-122 | 359.0 | |
| Nin1g02525 | . | 43 | 170 | GRAS Transcription Factor family | AT2G01570 | 44.366 | 2.47e-24 | 100.0 | |
| Nin1g02996 | . | 35 | 582 | GRAS Transcription Factor family | AT2G01570 | 63.589 | 0.0 | 696.0 | |
| Nin2g00143 | . | 251 | 471 | GRAS Transcription Factor family | AT1G14920 | 66.809 | 2.00e-105 | 314.0 | |
| Nin2g01708 | . | 366 | 466 | GRAS Transcription Factor family | AT3G54220 | 47.748 | 5.24e-26 | 100.0 | |
| Nin2g02161 | . | 16 | 592 | GRAS Transcription Factor family | AT1G21450 | 51.684 | 0.0 | 546.0 | |
| Nin2g03085 | . | 9 | 510 | GRAS Transcription Factor family | AT3G13840 | 47.122 | 1.16e-152 | 446.0 | |
| Nin3g00810 | . | 178 | 547 | GRAS Transcription Factor family | AT3G03450 | 29.688 | 2.12e-50 | 180.0 | |
| Nin3g01313 | . | 19 | 531 | GRAS Transcription Factor family | AT1G14920 | 62.05 | 0.0 | 684.0 | |
| Nin3g02125 | . | 6 | 404 | GRAS Transcription Factor family | AT5G41920 | 62.818 | 1.00e-171 | 486.0 | |
| Nin3g02458 | . | 27 | 529 | GRAS Transcription Factor family | AT1G14920 | 49.515 | 9.83e-165 | 476.0 | |
| Nin3g03213 | . | 215 | 582 | GRAS Transcription Factor family | AT2G01570 | 23.99 | 3.37e-16 | 79.3 | |
| Nin3g03215 | . | 242 | 584 | GRAS Transcription Factor family | AT5G66770 | 27.933 | 6.38e-22 | 97.4 | |
| Nin3g03216 | . | 241 | 583 | GRAS Transcription Factor family | AT5G66770 | 27.042 | 1.01e-19 | 89.7 | |
| Nin4g00083 | . | 144 | 507 | GRAS Transcription Factor family | AT1G66350 | 43.947 | 1.24e-98 | 311.0 | |
| Nin4g00799 | . | 24 | 478 | GRAS Transcription Factor family | AT1G50420 | 36.842 | 2.00e-99 | 303.0 | |
| Nin4g01302 | . | 12 | 409 | GRAS Transcription Factor family | AT3G49950 | 60.396 | 0.0 | 513.0 | |
| Nin4g01374 | . | 1 | 530 | GRAS Transcription Factor family | AT4G37650 | 59.15 | 0.0 | 576.0 | |
| Nin4g01777 | . | 25 | 485 | GRAS Transcription Factor family | AT4G36710 | 49.58 | 4.53e-143 | 419.0 | |
| Nin4g01779 | . | 25 | 485 | GRAS Transcription Factor family | AT4G36710 | 49.58 | 4.53e-143 | 419.0 | |
| Nin4g01780 | . | 25 | 485 | GRAS Transcription Factor family | AT4G36710 | 49.58 | 4.53e-143 | 419.0 | |
| Nin4g01810 | . | 1 | 584 | GRAS Transcription Factor family | AT5G66770 | 58.101 | 0.0 | 622.0 | |
| Nin4g02619 | . | 305 | 332 | GRAS Transcription Factor family | AT3G50650 | 82.143 | 6.18e-07 | 49.3 | |
| Nin5g01253 | . | 1 | 654 | GRAS Transcription Factor family | AT1G63100 | 54.559 | 0.0 | 628.0 | |
| Nin5g01590 | . | 94 | 555 | GRAS Transcription Factor family | AT4G00150 | 39.439 | 7.99e-105 | 327.0 | |
| Nin5g01902 | . | 338 | 445 | GRAS Transcription Factor family | AT1G55580 | 27.778 | 4.00e-13 | 62.4 | |
| Nin5g01903 | . | 150 | 508 | GRAS Transcription Factor family | AT1G66350 | 31.3 | 2.42e-53 | 189.0 | |
| Nin5g01904 | . | 170 | 546 | GRAS Transcription Factor family | AT3G03450 | 30.491 | 9.20e-57 | 196.0 | |
| Nin5g01908 | . | 313 | 480 | GRAS Transcription Factor family | AT2G01570 | 30.178 | 1.28e-25 | 101.0 | |
| Nin6g00909 | . | 199 | 555 | GRAS Transcription Factor family | AT4G00150 | 63.926 | 1.13e-157 | 468.0 | |
| Nin6g01313 | . | 1 | 482 | GRAS Transcription Factor family | AT1G50420 | 61.777 | 0.0 | 585.0 | |
| Nin7g01203 | . | 126 | 530 | GRAS Transcription Factor family | AT4G37650 | 51.389 | 4.16e-142 | 414.0 | |
| Nin7g01335 | . | 4 | 482 | GRAS Transcription Factor family | AT1G50420 | 67.22 | 0.0 | 654.0 | |
| Nin7g02009 | . | 244 | 458 | GRAS Transcription Factor family | AT1G14920 | 56.957 | 8.64e-76 | 238.0 | |
| Nin8g00003 | . | 39 | 145 | GRAS Transcription Factor family | AT5G41920 | 51.852 | 4.85e-24 | 95.9 | |
| Nin8g00955 | . | 28 | 489 | GRAS Transcription Factor family | AT5G48150 | 54.694 | 0.0 | 518.0 | |
| Nin8g01300 | . | 140 | 283 | GRAS Transcription Factor family | AT1G50600 | 49.315 | 8.83e-33 | 122.0 | |
| Nin8g01301 | . | 197 | 490 | GRAS Transcription Factor family | AT5G48150 | 81.293 | 1.61e-175 | 492.0 | |
| Nin8g01465 | . | 16 | 444 | GRAS Transcription Factor family | AT1G55580 | 45.175 | 3.06e-122 | 364.0 | |
| Nin8g01543 | . | 147 | 507 | GRAS Transcription Factor family | AT1G66350 | 35.99 | 8.41e-69 | 229.0 | |
| Nin8g01618 | . | 72 | 714 | GRAS Transcription Factor family | AT2G37650 | 52.006 | 0.0 | 672.0 | |
| Nin8g01619 | . | 72 | 714 | GRAS Transcription Factor family | AT2G37650 | 52.006 | 0.0 | 672.0 | |
| Nin8g01621 | . | 72 | 714 | GRAS Transcription Factor family | AT2G37650 | 52.006 | 0.0 | 672.0 | |
| Nin8g02115 | . | 1 | 767 | GRAS Transcription Factor family | AT1G07530 | 48.096 | 0.0 | 672.0 | |
| Nin8g02419 | . | 311 | 349 | GRAS Transcription Factor family | AT3G50650 | 64.103 | 3.35e-10 | 54.3 | |
| Nin8g02591 | . | 60 | 490 | GRAS Transcription Factor family | AT5G48150 | 72.581 | 0.0 | 661.0 | |
| Nin9g01647 | . | 86 | 767 | GRAS Transcription Factor family | AT1G07530 | 47.688 | 0.0 | 601.0 | |
| Nin9g02144 | . | 180 | 415 | GRAS Transcription Factor family | AT1G55580 | 37.5 | 7.42e-38 | 135.0 | |
| Nin9g02576 | . | 33 | 640 | GRAS Transcription Factor family | AT5G52510 | 46.445 | 2.13e-151 | 449.0 | |
| Nin9g02683 | . | 35 | 170 | GRAS Transcription Factor family | AT2G01570 | 40.94 | 1.39e-19 | 82.4 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Nin | GRAS | 6e-100 | CL0063 | TF | GRAS |