AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nin6g00927 ATGAAGTTCGGGAAGCGATTGAAGCAACAAATTCAAGAGACTTTGCCGGGTTGGCACGACAAGTATCTGGCTTATAAGGATTTGAAGAAGCTCGTGAAGTTGATCTCATCCGTGCCACGGCCATTGTTGGATCACGGATCGCTTGAGTACGGCGGATCAGAAGCCGAGTTTGTCTATTTATTGAACAATGAGATCGAGAAGTTTAACACATTTTTCGTGGAACAAGAAGAGGATTTCATTATCCGGCATAAGGAGTTACAACAGAGAATCAAGAGGGTGATGGAACAAAAGGGACCAAATGGGAATGAACCATCAGAAACAGATTTTGATGAGGAGATGGCTAAAATCAGAAAGGACATTGTAAATTTCCATGGTGAAATGGTTCTATTAGTCAATTACAGCAATATTAACTACACAGGGCTGGCTAAGATATTAAAGAAGTACGACAAGAGAACCGGGGGTTTGTTGCGTTTGCCCTTCATTCAGAAGGTGTTGGAACAACCATTTTTCACGACGGAGAACATATCGAAGATGGTAAGAGAGTGTGAGAGTACCCTAGACGAAGTGTTCCCGGAGGCGGTAGCCGAGGAGGAGGAGGAGAAAATTGGCGGCGATGGAGAGGGGAAAACGATGGTGGTGGGAGAAGGTATTTTCAGGAACACAGTGGCAGCGCTAATGACGATGAAAGAGATTAGGAACGGCAGCTCTACGTACAGCCATTTCTCTCTGCCGGTGCTCAATTTGCCTAATCCCGAGCTTATTCAGTCGTTTCAACTCAACTCGCCTATAGCGATTGTCTAA 801 44.94 MKFGKRLKQQIQETLPGWHDKYLAYKDLKKLVKLISSVPRPLLDHGSLEYGGSEAEFVYLLNNEIEKFNTFFVEQEEDFIIRHKELQQRIKRVMEQKGPNGNEPSETDFDEEMAKIRKDIVNFHGEMVLLVNYSNINYTGLAKILKKYDKRTGGLLRLPFIQKVLEQPFFTTENISKMVRECESTLDEVFPEAVAEEEEEKIGGDGEGKTMVVGEGIFRNTVAALMTMKEIRNGSSTYSHFSLPVLNLPNPELIQSFQLNSPIAIV 266
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nin6g00927 266 ProSiteProfiles SPX domain profile. 1 162 IPR004331 -
Nin6g00927 266 PANTHER SPX DOMAIN-CONTAINING PROTEIN 3 1 250 IPR031142 GO:0016036(InterPro)
Nin6g00927 266 CDD SPX-AtSPX1-like 2 151 - -
Nin6g00927 266 Pfam SPX domain 1 36 IPR004331 -
Nin6g00927 266 Pfam SPX domain 114 163 IPR004331 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nin6g00927 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nin Nin-Chr3:31119525 Nin6g00927 Nin-Chr6:10922961 dispersed
Nin Nin-Chr4:6697023 Nin6g00927 Nin-Chr6:10922961 dispersed
Nin Nin-Chr6:10922961 Nin5g02125 Nin-Chr5:42971104 transposed