AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nin6g00951 ATGGCATCATCGCCGGAGAAAAATTCACAGTTGCCGCCGGTGAACAAACCGGCAAGTTGGCCGGAGTTATGGTTGAACAAAGATCAACAAGCACTTAAGAATGTGATTCGGAAAATGCGGCGTCAGTCTCTGTCAAGTTCCAATACCCCCCCTTCTGATTGTGATGAAACCCTAAATTCGACCCCAACTGAGAAAAATTTAGGAAACCCATGTGGGAAAGATTATACTTCGGTGATTTCGGATCAAATTCTCGCCACTGTGCTGTCGAAGCTTCCGAAATCCGAGCGAATTCAGAATTCTTTGGTTTGTAAACGGTGGTGTAGGGTTCTTGGGGGCTTGGTTGATTGTATTAGGGTTTTAGATTGGGATTTTCTTGAATCGGGTAGGCTTGTTTATCGATTTCCGAACCTTGCTGACGTGGATATTGTTCAAGCTTGTTTGTTGACGCAGAGGAATTCTGGGGTTGTGTTGAGTAATCGATTAGTGGCAGTTCGAATCCCTTCGGTTTCGTCTGATTCTGGGTTCATTAGGAAATACGATTTGTTGAGTTCTGATGTGATTGATAGAGGGATTCAGATTCTTGTTCAAGGGTGTAAGAATTTGAGGAAACTTGTGTTGATTGGTGCGAGTGAAGAAGGGTTGTCTAGTGTTGCAGCTGAGTGTTTGACCTTGCAGGAACTGGAGCTGCATTCTTGTGGTGACTCTGATTTGAGAGGGATTGTGGGTTGCCAGAACTTACAGATTCTGAAACTCATTGGGTGCACTGGTGGGTTTTATGATTCTGTGATTTCGGATATTGGGTTGACCATTTTGGCTCAAGGGTGTAGGAGGTTAGTGAAGCTTGAGTTGGTTGGTTGTGAGGGAAGCTATGATGGAATCAAGGCTATTGGTCAATGCTGCTTAATGCTGGAGGAAGTGACAATCTGTGATCATAGGTTTGAAGGTGGATGGTTATCAGCGCTGTCGTTTTGTTGGAATTTGAAAACCTTGAAGCTTCGGTCTTGCAAGAGTATTGATTCTAGTCCAGGACCCAGTGAGCATTTGGGTTCTTGTCCTGCCCTTGAAGAATTACATTTGCAGAGGTGTCAATTGCGGGATAAAGAGGGTGTAGGGGCACTATTTTTAGTTTGTGAGGCTGTTAGAGAGCTCGTTTTTGAGGACTGTTGGGGATTGGACAATGCCATATTTAGCACTGCAGTTGTTTGTAGGAGAGTGACGTATCTGTCTTTGGAAGGATGCTCATTACTTACAATGGATGGTTTAGAGCCGGTTGTTCTTTCTTGGAAAGAGCTCAAGAGGCTTAAAGTAGTCTCATGTAACAATATAAAGGACAGTGACATTACTCCAGAATTAGCAACCTTATTTTCTGTTCTTAAGGAGTTGAAATGGAGACCAGATTCCAAGTCTCTGCTGTCGTCAGGTCTTGCTGGTACTGGAGTATGGCAGAAAGGTGGAGTTTTCAACCGGAAGTAA 1473 43.92 MASSPEKNSQLPPVNKPASWPELWLNKDQQALKNVIRKMRRQSLSSSNTPPSDCDETLNSTPTEKNLGNPCGKDYTSVISDQILATVLSKLPKSERIQNSLVCKRWCRVLGGLVDCIRVLDWDFLESGRLVYRFPNLADVDIVQACLLTQRNSGVVLSNRLVAVRIPSVSSDSGFIRKYDLLSSDVIDRGIQILVQGCKNLRKLVLIGASEEGLSSVAAECLTLQELELHSCGDSDLRGIVGCQNLQILKLIGCTGGFYDSVISDIGLTILAQGCRRLVKLELVGCEGSYDGIKAIGQCCLMLEEVTICDHRFEGGWLSALSFCWNLKTLKLRSCKSIDSSPGPSEHLGSCPALEELHLQRCQLRDKEGVGALFLVCEAVRELVFEDCWGLDNAIFSTAVVCRRVTYLSLEGCSLLTMDGLEPVVLSWKELKRLKVVSCNNIKDSDITPELATLFSVLKELKWRPDSKSLLSSGLAGTGVWQKGGVFNRK 490
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nin6g00951 490 SUPERFAMILY F-box domain 65 110 IPR036047 GO:0005515(InterPro)
Nin6g00951 490 MobiDBLite consensus disorder prediction 1 15 - -
Nin6g00951 490 FunFam Uncharacterized protein 257 346 - -
Nin6g00951 490 MobiDBLite consensus disorder prediction 38 67 - -
Nin6g00951 490 MobiDBLite consensus disorder prediction 1 22 - -
Nin6g00951 490 Gene3D Ribonuclease Inhibitor 313 372 IPR032675 -
Nin6g00951 490 Gene3D Ribonuclease Inhibitor 373 465 IPR032675 -
Nin6g00951 490 Gene3D Ribonuclease Inhibitor 75 312 IPR032675 -
Nin6g00951 490 SMART LRR-CC-2 275 299 IPR006553 -
Nin6g00951 490 SMART LRR-CC-2 351 376 IPR006553 -
Nin6g00951 490 SMART LRR-CC-2 402 427 IPR006553 -
Nin6g00951 490 SMART LRR-CC-2 243 274 IPR006553 -
Nin6g00951 490 SUPERFAMILY L domain-like 157 451 - -
Nin6g00951 490 PANTHER UNCHARACTERIZED 84 458 - GO:0019005(PANTHER)|GO:0031146(PANTHER)
Nin6g00951 490 MobiDBLite consensus disorder prediction 39 67 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nin6g00951 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nin Nin-Chr6:11297604 Nin9g02294 Nin-Chr9:34660921 dispersed
Nin Nin-Chr6:11297604 Nin4g00316 Nin-Chr4:2945944 transposed