AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nin6g00957 ATGTTGCCGCTCTCGTTAATCGTCCCGAACCAGATTCGGCACTTGCTTCACAGCTTGAATGAATCCAATTCCGATTCAGTTCTTCAGCAACTCTATCAGTATGTTGATTATGGGACAGAAGGAAGCATATTGCTTCTCCAGACCTGCTCGGATCACTTCAACATCTATGGGGCTGGCATGAAGGATAGGCAACTGGATCCAATAGTTGCTTCAGTTTATAAATATATGCTTCAGAAATCTAATTTCAGTACTGTGTTTGCCGAATCCCTGAGAAGGAAAGCAGTCAGTGAAGAATTCTTGGACAATCTCTCAACCGCACTAAAGTTATCGCCTTTCGAGAGAATTGGATTTGGTCTTGCTTTATCAGATTCGGAAAATCTTGACTTAAGAATGTGTGGGAGGAACTTCTGCATAGCCCAGATTGAGGAATTATGTGCTGATCGGACTTCTTTGGATTCCTTTGATAAAATTCAGGATGTATTAATGTTCTTTAGCCATTCTGAAGGCCTTTCGAAGCATGTGGATACATTTATGCAGATGTTATCTCTAGTTCAGTTAAAGGAGGATTCTGAATTTATCTTAGCTCCTTTGCTTTCTGATGAACTGAGAGAAACCCACTTTTTGAGAAATCTGGACTTGCTCACTGAAGGAAACGGAAATGAGTTTGATGCTATTTTAGCAGAAATGGAGAAAGAGATGAGCATGGCCGATGTTTTGAGAGAATTGGGTCATAAGAGCACAATTGATATATCGGTTTGCAAAGAAATGTTATCTCTGTTCTTACCACTGACAGAAATAACAGTTGCTAGGATACTTGGCACAATTGCCCGCACAGATGCAGGTCTCGAGGAAAATGAAAATGTGTTCTCCACATTCTGTTCTGCTTTTGGTAGCTGCAGTTTGTCAGAGCTTCAACCATTGAATTCTTGGAACACTGATGTTCTCATAAGTTCTATTAAACAGCTAGCTCCTGGAATCAATTGGACGACTGTCATGGAGAACCTCGATCATGAGGGATTCTACATACCTGATGAGGCAGCTTTCTCTTTCTTCATGTCCTGTTATAGGCAGGCCTGCCAGGATCCTTTTCCACTCTCTGCTGTTTGTGGAAATGTTTGGAAGAATGCTGAGGGGCAGTTGTCTTTTCTAAAGTATGCTGTGTCAGTACCACCTGAAGTATTTACGTTTGCACATTCTGGAAGACAACTGACATATGTTGATGCAGTGAATGGTCATAAGTTTCAACCTGGGCATGCGAATCATGCATGGTTATGTCTTGACCTTTTGGAGGTCTTGTGCCAGCTAGCTGAGAGAGGTCTTGCAACTTCTGTCCGCTCAATGCTCCACTATCCTCTTAAGAATTGCCCAGAAGTGTTGCTTCTTGGGATGGCCCATATTAATACGCCATATAATCTCCTTCAATATGAAGTGTCTTCTGCTGTTCTGCCCGTGGTGCTTAAAGATAGCTCAGGAAGTGGAGTTGTTCATCATCTTTGGCATGTTAACCCAAATATTTTGCTGAGGGGATTGGTTGATTCTCTCCACATGGACCCTGACAATATAATTAGAGTTTTGGACTTGTGTCTGGAGCTGAAGATTTTGTCACCGGTGTTGGATTTGATTCCTACATCTCTGGGGATTAGAATGGCTGCACTCGCTTCTCGAAAGGAAGTCATAGACCTGGAGAAGTGGTTGAACTCTAATTTAAGTACATACAAAGACACATTCTTTGAGGATTGCCTCAAATTTCTAAGGGAGGTTCAAGTTGGTGCTCAAGATATTTCTGCTAACCGTTTTCATCACTCTAGTGTTGTGTGGGATCTTTATGCTGAGACAAGTCCTATAATTTTGAAGGTCCTTCAAGCTCATAGAGGTTTGATTTCTTCTAGCCAACTTTCTGAAGAAATGGATAGGTTGGATGTGACATTTATGCATGGCAGTTCAAGGATGAAGACAAGTGTTGGCCCTGATACATTAACTTCTGAAGCATATGCAAATGATATAGAGTTAGAGTCTAATGCTTATTTTCATCAGATGTTTAATGATAAATTGACAATTGATGCTATGATCCAAATGCTTATCCGGTTTAAGGAATCTTCGGTCAAAAGGGAACAAGCCATATTTGAGTTTATGATCGCTAACCTATTTGAGGAGTACAAATTTTTCTCCAAATACCCTGAAAAACAGCTTGTAATTGCTGCTATTCTCTTTGGATCACTTATCAAGCATCAACTTGTAACTCATCTCACACTCGGCATCGCCTTGCGAGTTGTTTTGGATGCATTGCGCAAACCTGCAGATTCCAAAATGTTTGTTTTTGGGACAAAAGCCCTGGAACAGTTCGTGGATCGCCTGATTGAGTGGCCACAATATTGCAACCATATCTTACAAATATCGCATCTCCGTGGCACTCACTCAGAGCTTGTTGCTTTTATTGAGCAGGCCCTTGCCAGAATCTCATCAGGACATTCAGAAACAGATGTTGGCCATAGTCCTGCTATTGACCAACATCACAATTCTCTCCCAGCAGCAAATGTGGAGATATCTGGTTCGTCATTTCCTTCAATTGCACAGAGTAGCTCTATGCTTGGGTCACAAACATCTTCTCCTGTCCAGCTTCAACAAAGGAACCCAAGTTCTGTGGACGAGAGGCATAAAGCCTCTATAAATTCATCAAATCGCACGAAACCATTCTTGGGTACTGCAGGACAAGTCTCGGCTGCTCCCACAAACGAAACAGTTAACAATCAAAAGCCTCCAAGTGTAGCTGCTTCTTCGGCAGCATTGGCTTCCTCCCCTGGTTTCATTCGACCATCCAGAGCAGTTACCTCTGCAAGGTTCGGCTCTGCGTTAAATATTGAAACACTTGTTGCCGCTGCAGAACGAAGAGAAAGTCCCATAGAGGCTCCACCATCAGAAACTCAGGATAAGATATCATTCATTATTAACAATTTATCGGCTGCCAATGTTGAAGCTAAGGCAAAAGAATTCACTGAGATACTGAAAGAACAGTATTATCCCTGGTTTGCACAGTATATGGTCATGAAAAGAGCGAGCATTGAACCAAATTTTCATGATTTGTACTTGAAGTTCCTTGAAAAAGTTAGCTCAAAACCTCTAAACAAAGAGATTGTTCAAGCCACTTATGAGAACTGCAAGGTTCTTTTAGATTCCGATCTCATAAAATCTAGTTCAGAAGAGCGGTCATTGCTGAAGAATCTTGGAGGCTGGCTTGGGAAAATTACAATTGGAAGAAATCAAGTTTTACGTCAACGAGAGATTGATCCGAAATATTTGATCATTCAGGCATATCAGACGGGTAAAATGATTGCTGTAATTCCGTTCACCTCCAAGATTTTGGAACCCTGCCAGAGCAGTCTAGCATACCAACCTCCCAACCCTTGGACAATGGCTATTCTTGGTTTACTTGCTGAGATTTATGCAATGCCAAATTTGAAAATGAATCTCAAATTTGAAATTGAGGTTTTGTTCAAGAACCTTAGCGTGGATTTAAAGGAAGTGCCTCCAACTTCACTTCTCAAGGATAGGATGAGGGAGGTGGAAGGAAATCCCGACTTTTCCAATAAAGATGTCGGGTCATCCCAACAAATCGTTGGCGAAGTGAAATCTAGCATGATATCTACTCTAAATCAAGTTGAATTGCCACTTGACGCTGCGAGTCCATCTCACCCAGGTGGCCATTCACGTATATTGTCGCAGTATGCCACTCCTCTCCATCTTCCTGCTGGTACATTGAGTGAGGATGAGAAGATGGCAGCTCTGGGCTTACCTGACCAGCTTCCTCCTGCTCAAGGACTTCTACAAGGACAATTGCCATTTTCAGTCAGTCAGCTTCCTGCACCTGCGTCGAACATTGAGCAGCAAGTTGTTGTCAATCCAAAGTTACAAGCTCTTGGCCTGCACTTACATTTTCAAAGTGTGCTTCCCATCGCCATAGATAGGGCTATCAAAGAAATAGTTACTAGTATTGTGCAGCGAAGTGTATCTATAGCAACTCAAACGACTAAAGAACTTGTGTTGAAGGACTATGCGATGGAATCAGATGAGACATGTATACTTAGTGCAGCTCATTTGATGGTGACAAGTTTGGCGGGAAGTCTAGCTCATGTGACATGCAAGGAACCTCTCCGTGGTTCTATTTCAAGTCAGCTGAGAAATTCTCTTCAGGGTTTGGGTATTGCAAATGAACTCCTTGAACAGGCTGTACAACTTGTTACTAATGACAACCTCGATTTGGGATGTGCCCTAATAGAGCAGGCTGCAACAGAGAAGGCTATACAAACAATTGATGGGGAAATTGCTCCACAACTTTCTATGAGAAGGAAACAGAGAGAAGGTGTTGGATCCGCATTTTTTGATTCAAGCCTATATACACAAGGGCTTGTGGGGGTTGTACCAGAAGGTCTCCGACCTAAACCTGGCCGGTTATCGCATTCTCAACAGAGAGTTTATGAGGACTTTGTTCGGTTGCCATGGCAGAATCAATCGAACCAGAACTCAAATGCTTTGCCTGTTGGTCCTTCAGCTCCATCAGTAAGTGGTGCCTTAACTAGGGGATATGGCTCTGTGTCAGGACAGCTGAACCCCAGTGTTTACTCGACTGGAATGGGGAACACAGGTGTCAGTGCTGTTGCACACTCCTTGGATCCTGAAGAGATGGAGTCTAGTTCCGCGAAGCTTCTTAGTGTTTCATCGATTCATGCTGGGATTTCTGTGGGGACAAGTCAGCACAACTTAGAAAATGAATCAGTTACTCCTTCATTTTCTCCAGTTTCAACTCCTGAACTGCAGTCAGCAGAACCTTCGATAGTTGTAAAGGAGCCGGGAGTTTATGCACAGCCTTCACCTTTAGTGTCAGCTCCAGAGCGCCTTTTGAGTAATGTGCTAGAACCTTCATTGACTACAGGCGATGCATTGGATAAGTTCCACATTATTTCAGAGAAGCTTGAAGTTTTGATTGCTGATGATGCGAAGGAAGCTGAGATTCAGGCAATTATCAATGAGGTTCCTGGGATCATTCTCAGATGCATAAGTAGGGACGAGGCCGCCTTGGCTGTGGCCCAGAAGGTTTTCAAGAGTTTATATGAAAATGCATCCAACACGGCTCATGTTGGCGCTCATCTTGCTATATTGGCTGCTATTCGTGATGTTAGCAAGCTTGTGGTCAAGGAATTAACTAGTTGGGTAATTTATTCTGATGAGGACCGAAAGTTCAACAAAGATATTACTATTGGCCTAATTCAAAGAGAGCTTCTGAACCTTGCTGAATATAACGTTCATATGGCTAAGCTTCTTGATGCGGGAAAGAATAAAACGGCAACGGAGTTCGCAATTTCACTTATTAAACAATTGGTTATCAGTGATCCAAGAGTAATATCTGAACTGCAAAATCTTGTTGATGCGCTAGGAAAGCTTGCAGCAAGGCCTGAATCTCCTGAAGCATTGCAACAGCTTGTGGAGATTGCCAGAAACCCAGCAGCTAATGTCTCATCTTTGGCTGGTTTTACTATTGGGAAGGAAGACATTGCCAGGCAGCCTAAAGACAAGAAGGTTCCCGGACACTCTGCAACAGGAAGCAATGATTATAATATTATGGAGTTACCTGAGCCAGATCCTGCAGGTTTCCGTGAGCAGGTTTCTATGCTATTTGCTGAATGGTACCGGATATGTGAACTTCCTGGTGTAAATGATGCTGCTTGTGCTCATTATGTCTCACAACTGCACCAAAATGGATTGCTGAAAGCGGATGATATGTCGGATCGTTTTTTCCGCCGGTTAATGGAAATCGCCGTATCACATTGCCTGACTTCTGATCCATTATCATTCCTTGCCATTGATATATATGCGGCACTTGTTTTTTCGATCTTGAAGTTTTGCCCCGTCGACCAGGGAGCAAACAAGCTATCCCTTTTATCTAAGGTTTTGGCTGTGACAGTACGATCTATTCAAAAAGATGCTGAGGAAAAGAAAGCATCGTTCAATCCAAGACCATATTTCAGGCTGTTTATTAACTGGCTGCTTGATCTAACTACCTTGGAACCAGTATTTGATGGTGCAAATCTTCAGGTTTTGATAGCTCTAGCAACTTCATTTCATGCTCTGCAACCACTCAAAATTCCTGCATTCAGCTTTGCATGGCTTGAACTAGTGAGCCACAGAAGCTTCATGCCGAAACTGCTCAGTGGAAATGCACAGAAGGGGTGGCCCTATTTTCAGCGCTTGCTTGTAGACTTGTTTCAGTTCATGGAGCCTTTCTTGAGGAATGCTGAACTTGGACAGCCGGTTCATTTCCTGTACAAGGGGACACTCAGGGTGCTGTTGGTGCTGCTTCATGACTTCCCTGAGTTCCTTTGTGATTATCATTTCAGCTTCTGTGATGTTATCCCCCCGAGTTGCATACAGATGAGAAATATAGTACTCAGTGCATTTCCCCGCAACATGAGGCTGCCAGACCCGTCCACACCCAATTTAAAGATTGATTTGCTAGCGGAAATTAGTCAATCGCCTCGCATTCTCTCTGAAGTCGATGCTGCTTTGAAAGCAAAGCAGATGAAGGGTGATGTGGACGAGTATCTAAAGACACGACAACAAGGGTCTTCATTTCTTTCTGAATTGAAGCAGAAATTGCTCCTTTCACCTGCAGAGGCTGCTAGGTCTGGGACGCGGTACAATGTGCCTTTGATCAATGCGCTTGTACTTTATGTTGGAATGCAGGCTATCCAGCAGTTACAGGCACGGACTCCTCCGCACGCCCAGTCGATGGCCAGCAGTGTTCCACTGGCTGTGTTCTTAGTGGGCGCCGCTTTGGACATCTTTCAAACGCTTATACTGGATCTGGAGACTGAAGGCCGCTATCTGTTCCTGAATGCAGTTGCAAACCAACTTCGTTACCCCAACAACCATACACACTACTTTTCTTTCATCCTTCTTTATTTGTTTGCTGAATCAAATCAGGAAGTCATTCAGGAGCAGATCACCAGAGTTCTGTTGGAGCGGTTAATTGTGAACCGTCCACATCCATGGGGTCTTCTGATCACTTTCATTGAGCTTATAAAGAACCCTAGGTACAACTTCTGGAGCCGATCATTCACTAGGTGTGCTCCTGAGATTGAGAAACTTTTCGAGTCAGTTTCGAGATCATGTGGGGGCCCAAAACCCGTGGACGATAATGTGGTTGCAGGAGGAATATCAGATAACATGCACTAG 7227 43.31 MLPLSLIVPNQIRHLLHSLNESNSDSVLQQLYQYVDYGTEGSILLLQTCSDHFNIYGAGMKDRQLDPIVASVYKYMLQKSNFSTVFAESLRRKAVSEEFLDNLSTALKLSPFERIGFGLALSDSENLDLRMCGRNFCIAQIEELCADRTSLDSFDKIQDVLMFFSHSEGLSKHVDTFMQMLSLVQLKEDSEFILAPLLSDELRETHFLRNLDLLTEGNGNEFDAILAEMEKEMSMADVLRELGHKSTIDISVCKEMLSLFLPLTEITVARILGTIARTDAGLEENENVFSTFCSAFGSCSLSELQPLNSWNTDVLISSIKQLAPGINWTTVMENLDHEGFYIPDEAAFSFFMSCYRQACQDPFPLSAVCGNVWKNAEGQLSFLKYAVSVPPEVFTFAHSGRQLTYVDAVNGHKFQPGHANHAWLCLDLLEVLCQLAERGLATSVRSMLHYPLKNCPEVLLLGMAHINTPYNLLQYEVSSAVLPVVLKDSSGSGVVHHLWHVNPNILLRGLVDSLHMDPDNIIRVLDLCLELKILSPVLDLIPTSLGIRMAALASRKEVIDLEKWLNSNLSTYKDTFFEDCLKFLREVQVGAQDISANRFHHSSVVWDLYAETSPIILKVLQAHRGLISSSQLSEEMDRLDVTFMHGSSRMKTSVGPDTLTSEAYANDIELESNAYFHQMFNDKLTIDAMIQMLIRFKESSVKREQAIFEFMIANLFEEYKFFSKYPEKQLVIAAILFGSLIKHQLVTHLTLGIALRVVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRGTHSELVAFIEQALARISSGHSETDVGHSPAIDQHHNSLPAANVEISGSSFPSIAQSSSMLGSQTSSPVQLQQRNPSSVDERHKASINSSNRTKPFLGTAGQVSAAPTNETVNNQKPPSVAASSAALASSPGFIRPSRAVTSARFGSALNIETLVAAAERRESPIEAPPSETQDKISFIINNLSAANVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLEKVSSKPLNKEIVQATYENCKVLLDSDLIKSSSEERSLLKNLGGWLGKITIGRNQVLRQREIDPKYLIIQAYQTGKMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYAMPNLKMNLKFEIEVLFKNLSVDLKEVPPTSLLKDRMREVEGNPDFSNKDVGSSQQIVGEVKSSMISTLNQVELPLDAASPSHPGGHSRILSQYATPLHLPAGTLSEDEKMAALGLPDQLPPAQGLLQGQLPFSVSQLPAPASNIEQQVVVNPKLQALGLHLHFQSVLPIAIDRAIKEIVTSIVQRSVSIATQTTKELVLKDYAMESDETCILSAAHLMVTSLAGSLAHVTCKEPLRGSISSQLRNSLQGLGIANELLEQAVQLVTNDNLDLGCALIEQAATEKAIQTIDGEIAPQLSMRRKQREGVGSAFFDSSLYTQGLVGVVPEGLRPKPGRLSHSQQRVYEDFVRLPWQNQSNQNSNALPVGPSAPSVSGALTRGYGSVSGQLNPSVYSTGMGNTGVSAVAHSLDPEEMESSSAKLLSVSSIHAGISVGTSQHNLENESVTPSFSPVSTPELQSAEPSIVVKEPGVYAQPSPLVSAPERLLSNVLEPSLTTGDALDKFHIISEKLEVLIADDAKEAEIQAIINEVPGIILRCISRDEAALAVAQKVFKSLYENASNTAHVGAHLAILAAIRDVSKLVVKELTSWVIYSDEDRKFNKDITIGLIQRELLNLAEYNVHMAKLLDAGKNKTATEFAISLIKQLVISDPRVISELQNLVDALGKLAARPESPEALQQLVEIARNPAANVSSLAGFTIGKEDIARQPKDKKVPGHSATGSNDYNIMELPEPDPAGFREQVSMLFAEWYRICELPGVNDAACAHYVSQLHQNGLLKADDMSDRFFRRLMEIAVSHCLTSDPLSFLAIDIYAALVFSILKFCPVDQGANKLSLLSKVLAVTVRSIQKDAEEKKASFNPRPYFRLFINWLLDLTTLEPVFDGANLQVLIALATSFHALQPLKIPAFSFAWLELVSHRSFMPKLLSGNAQKGWPYFQRLLVDLFQFMEPFLRNAELGQPVHFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNIVLSAFPRNMRLPDPSTPNLKIDLLAEISQSPRILSEVDAALKAKQMKGDVDEYLKTRQQGSSFLSELKQKLLLSPAEAARSGTRYNVPLINALVLYVGMQAIQQLQARTPPHAQSMASSVPLAVFLVGAALDIFQTLILDLETEGRYLFLNAVANQLRYPNNHTHYFSFILLYLFAESNQEVIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWSRSFTRCAPEIEKLFESVSRSCGGPKPVDDNVVAGGISDNMH 2408
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nin6g00957 2408 Pfam CCR4-NOT transcription complex subunit 1 TTP binding domain 658 819 IPR032193 -
Nin6g00957 2408 MobiDBLite consensus disorder prediction 855 920 - -
Nin6g00957 2408 CDD NOT1-connector 1639 1830 - -
Nin6g00957 2408 Gene3D - 1872 2152 - -
Nin6g00957 2408 MobiDBLite consensus disorder prediction 855 878 - -
Nin6g00957 2408 FunFam Ccr4-Not transcription complex subunit 940 1188 - -
Nin6g00957 2408 Gene3D - 656 821 IPR038535 -
Nin6g00957 2408 Pfam CCR4-Not complex component, Not1 2022 2384 IPR007196 -
Nin6g00957 2408 Gene3D - 939 1188 - -
Nin6g00957 2408 Pfam CCR4-NOT transcription complex subunit 1 HEAT repeat 476 621 IPR032194 -
Nin6g00957 2408 Pfam CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819 1310 1451 IPR024557 -
Nin6g00957 2408 FunFam Transcription regulator 655 822 - -
Nin6g00957 2408 FunFam CCR4-NOT transcription complex subunit 1 2153 2383 - -
Nin6g00957 2408 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX 7 2390 IPR040398 GO:0000288(PANTHER)|GO:0000932(PANTHER)|GO:0017148(InterPro)|GO:0030015(PANTHER)|GO:0030015(InterPro)|GO:0060090(PANTHER)
Nin6g00957 2408 FunFam Transcription regulator 1871 2156 - -
Nin6g00957 2408 MobiDBLite consensus disorder prediction 891 920 - -
Nin6g00957 2408 MobiDBLite consensus disorder prediction 1851 1870 - -
Nin6g00957 2408 Pfam CCR4-NOT transcription complex subunit 1 CAF1-binding domain 967 1187 IPR032191 -
Nin6g00957 2408 Gene3D - 2153 2383 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nin6g00957 K12604 CCR4-NOT transcription complex subunit 1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nin Nin-Chr6:11287721 Nin6g00957 Nin-Chr6:11374033 proximal