AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nin6g00966 ATGTCTCTGCACCACCATGCTCTCATTCTACGCTTCTTCTTCTTCCTATTCTTCTATCCCACATGCATTCCGGCGAAACCAACTCCGGCAACAGTTTTATCGGGGACCGACACACATCACAATTCCACTTGGCGAAATTTCGATGACTTACAAGATGCCTCGATAGGGAGCCATGGCGCCATTAATATATCGAACATCAAGAGATACATGCACCAGTTCGGATATCTTAAGGTTCCGGATTTCACTGATGAATTCGACTCCACGTTCAAAAACGCAATAGTTAGGTATCAATCCAAGCTCGGCCTAGCCGTCACTGGCGAGCTCAACTCGGAAACACTCTCGCAAATCATGTCTCCGAGATGTGGCTTGCCGGACACGGCAACTTCATCGTCAAACTTGCATGAAGCCATGCACTACAAATACTTTCCCGGGAAGCCGAGATGGGGTGCACGTAAAAACATTCCCATAACCCTAACCTACGCATTCTCACCACAACATATGATCACCACCTTAAACATTTCCGAAATAAGGCGAGTTTTCCAACGAGCTTTCTCACGGTGGTCGGCGGTTATTCCGGTGAACTTCACGGAAGCCGCCGACTACGGATTCGCCGACATCAGGATAGGGTTTTACAGCGGTGACCATGGTGACGGGGAGTCGTTTGACGGGGTACTAGGTGTTTTGGCCCATGCGTTTTCGCCGGAAAGCGGGAGGTTCCACCTCGACGCGGCGGAAACATGGGCGGTGGATTTTGTGTCGGAGAAATCGGCGGTGGCTGTGGATTTGGAGTCAGTGGCCACGCATGAGATTGGGCATGTGTTAGGGTTGGCTCATACTTCAGTCAAAGAAGCTGTCATGTACCCTAGCCTGAACCCTAGGGAGAAAAAATTTGATTTGAAGATGGATGATATAAAAGGGATTCAAGCACTTTATGGTTCAAACCCTAAATTTAGAATGGAGGCCTTGTCTGAATCTTATACTTCTTCAAATCATGCCATTGGCCTCCGTCCGCTCCGCCAAGTCCCACCGCCTCCCCTTCGTCTCCGACCCCGTCTTCCTTTCCCCTCCGATTCCATCCTCTCCGCGTCCGATTTCGCCGACCCGACTCTATCTCCGGATTCAATCATTCTAAGCTGCTCGGCTTAG 1146 50.09 MSLHHHALILRFFFFLFFYPTCIPAKPTPATVLSGTDTHHNSTWRNFDDLQDASIGSHGAINISNIKRYMHQFGYLKVPDFTDEFDSTFKNAIVRYQSKLGLAVTGELNSETLSQIMSPRCGLPDTATSSSNLHEAMHYKYFPGKPRWGARKNIPITLTYAFSPQHMITTLNISEIRRVFQRAFSRWSAVIPVNFTEAADYGFADIRIGFYSGDHGDGESFDGVLGVLAHAFSPESGRFHLDAAETWAVDFVSEKSAVAVDLESVATHEIGHVLGLAHTSVKEAVMYPSLNPREKKFDLKMDDIKGIQALYGSNPKFRMEALSESYTSSNHAIGLRPLRQVPPPPLRLRPRLPFPSDSILSASDFADPTLSPDSIILSCSA 381
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nin6g00966 381 PRINTS Matrixin signature 180 195 IPR021190 GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Nin6g00966 381 PRINTS Matrixin signature 116 129 IPR021190 GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Nin6g00966 381 PRINTS Matrixin signature 204 232 IPR021190 GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Nin6g00966 381 PRINTS Matrixin signature 265 290 IPR021190 GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Nin6g00966 381 PRINTS Matrixin signature 299 312 IPR021190 GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Nin6g00966 381 Gene3D Collagenase (Catalytic Domain) 55 317 IPR024079 GO:0008237(InterPro)
Nin6g00966 381 FunFam Metalloendoproteinase 1 54 317 - -
Nin6g00966 381 SUPERFAMILY Metalloproteases (zincins), catalytic domain 141 315 - -
Nin6g00966 381 PANTHER MATRIX METALLOPROTEINASE 12 330 - GO:0004222(PANTHER)|GO:0030198(PANTHER)|GO:0030574(PANTHER)
Nin6g00966 381 CDD ZnMc-MMP 157 312 IPR033739 GO:0008237(InterPro)|GO:0008270(InterPro)
Nin6g00966 381 SMART col-5 144 313 IPR006026 GO:0006508(InterPro)|GO:0008237(InterPro)|GO:0008270(InterPro)
Nin6g00966 381 SUPERFAMILY PGBD-like 63 126 IPR036365 -
Nin6g00966 381 Pfam Matrixin 153 312 IPR001818 GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)|GO:0031012(InterPro)
Nin6g00966 381 Pfam Putative peptidoglycan binding domain 63 115 IPR002477 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nin6g00966 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nin Nin-Chr6:11585103 Nin9g00220 Nin-Chr9:1963085 dispersed
Nin Nin-Chr6:11585103 Nin1g00593 Nin-Chr1:6271359 transposed