AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nin6g00968 ATGGAAAATGGATGGAGCTTATTCAGCAACATTACCGACAGTGGTAATGGAGCTGTCGCTACAATCGGCAGAGGGCAAAATGGTCATTCCACCAACAACGTTGCATGGGATATCTGGGACAATAATACGACTAATTCATCACGTTACGACTGGTGCAACCACACCACCACCTCCTCCTCCGCCGCCGCCGCCGCATTCCACCAGCTCTCCGCCGCGTCCGCAGAGGCGAGTGCGCTCCACGCTCTCCTCTTCAACCCCGCGGACCACCTCATGTGCTTGAAGCTCGGGAAGCGCCACTACTTCGAGGACCCCATTAATTACGCCGGCGGCGGCGGCGACGGCGACCCGCTCTACAAGCGCGGGAAGCCCTACTACGGCCTCCCTCCGGCCGCCGTCACGGTGGCTTCCGTCGCTCCGCCACCCGTTGTCGTGCCCAAGTGCCAGGTGGAGGGGTGCCACGTGGCGCTCCTCCACGCCAAAGAGTATCACCGCCGGCATAAGGTCTGTGAGATGCATTCCAAAGCTCCTAGAGTCATGGTGTTTGGCCAAGAACAACGTTTTTGTCAACAGTGTAGCAGGTTTCATGGAGTGGGGGAGTTTGATGAATCTAAGAGGAGTTGCAGGAGGAGATTAGCAGGGCATAACGAGAGGAGAAGAAAGGGTTCGAGCTCCATTAATGGTGGTTCTATTGCTTCAATTTCTCTTTCCAAAAATACCCCTCGAGGGCGTGCTCTCTCTCTTCTGTCATCGAAGAACAACACCGGATCCTGGATCTCTTCGGCCGACCTCTCTTTGAGATGCAGCGCCGCATTGAGCGAACTGATTGCCGAAAACCGAGCAGCGATCTTCGGGCGGGCAATGTGGAACAACGTGCACAACACAACCCTACTAGAATCGGATAATACTGAAACGTACAAGAACAATGATCACCACCACCAACAACATCAGTCTCCCGTTTCTTCGGCTCACCACAACCAGGAGATGTTGCACGATAATTCACACGTGTGGAACAAGTTCCACACGGGAGCCGACACGACCATGACATTGAACCTGAGGCAGGCTCCGAATTCAGCATTCGGGTTCTTGTCCGTCCGAGGAAAATCAAAGGAGACTGAAGATTGCCCTGATTTTTGGACCACCCTCGGAGACACCCATGTTGTTTAG 1164 54.47 MENGWSLFSNITDSGNGAVATIGRGQNGHSTNNVAWDIWDNNTTNSSRYDWCNHTTTSSSAAAAAFHQLSAASAEASALHALLFNPADHLMCLKLGKRHYFEDPINYAGGGGDGDPLYKRGKPYYGLPPAAVTVASVAPPPVVVPKCQVEGCHVALLHAKEYHRRHKVCEMHSKAPRVMVFGQEQRFCQQCSRFHGVGEFDESKRSCRRRLAGHNERRRKGSSSINGGSIASISLSKNTPRGRALSLLSSKNNTGSWISSADLSLRCSAALSELIAENRAAIFGRAMWNNVHNTTLLESDNTETYKNNDHHHQQHQSPVSSAHHNQEMLHDNSHVWNKFHTGADTTMTLNLRQAPNSAFGFLSVRGKSKETEDCPDFWTTLGDTHVV 387
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nin6g00968 387 MobiDBLite consensus disorder prediction 211 234 - -
Nin6g00968 387 FunFam Squamosa promoter-binding-like protein 14 140 208 - -
Nin6g00968 387 Gene3D - 142 208 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Nin6g00968 387 MobiDBLite consensus disorder prediction 302 325 - -
Nin6g00968 387 Pfam SBP domain 147 220 IPR004333 GO:0003677(InterPro)
Nin6g00968 387 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 59 327 IPR044817 GO:0003677(InterPro)
Nin6g00968 387 ProSiteProfiles Zinc finger SBP-type profile. 144 221 IPR004333 GO:0003677(InterPro)
Nin6g00968 387 SUPERFAMILY SBT domain 145 223 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nin6g00968 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nin Nin-Chr6:11624197 Nin8g02161 Nin-Chr8:30347895 dispersed
Nin Nin-Chr6:11624197 Nin6g00969 Nin-Chr6:11644510 tandem
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Nin1g00117 . 101 199 SBP-box gene family AT5G50670 71.0 1.14e-46 159.0
Nin1g00135 . 1 367 SBP-box gene family AT5G43270 42.512 4.54e-71 229.0
Nin1g02216 . 61 181 SBP-box gene family AT3G15270 52.899 2.20e-41 136.0
Nin2g00180 . 101 359 SBP-box gene family AT5G50670 41.639 3.57e-56 186.0
Nin2g00491 . 41 234 SBP-box gene family AT1G69170 46.154 1.37e-45 164.0
Nin3g02053 . 169 245 SBP-box gene family AT5G43270 80.519 2.93e-40 142.0
Nin4g00095 . 1 280 SBP-box gene family AT5G50670 39.333 5.59e-43 151.0
Nin5g00018 . 1 881 SBP-box gene family AT2G47070 49.613 0.0 867.0
Nin5g00575 . 17 794 SBP-box gene family AT5G18830 45.125 0.0 645.0
Nin6g00968 . 98 242 SBP-box gene family AT5G43270 48.0 9.67e-37 136.0
Nin6g00969 . 1 270 SBP-box gene family AT1G02065 53.791 7.66e-85 256.0
Nin6g01968 . 40 139 SBP-box gene family AT1G53160 67.0 3.54e-42 137.0
Nin8g00717 . 42 136 SBP-box gene family AT3G15270 64.0 3.54e-39 130.0
Nin8g02161 . 32 375 SBP-box gene family AT2G42200 39.695 8.99e-57 188.0
Nin9g00028 . 1 949 SBP-box gene family AT1G20980 53.073 0.0 962.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Nin SBP 1e-30 No_clan TF SBP