AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nin6g00990 ATGCAGGCCAAGCTCTTCCATAATACCATCCCACCAAAGTCTCCCTCACCATCGCCGCCGGCCAAGTTACCGCCACCGAGTGCCGTCACACTACCCGATCAACTATCTGTGCCGGCACAAGCTATCTCGATATCAGCGCCCCCAAACCGTCACCACCATACACCCACCCTAGACGACATCATCGTGGACGACAAGGTCGCCGCGTTTTGGGATTACCAATTTCTCTTCGTATCACAACGCTCCGAAACACACAGTCCTATAGCCCTTCGTGTGGTGGAAGGCGGGGTCCCGTCCGATTTCCCATCCGGGACGTATTACTTGACAGGCCCTGGTTTATTCACCGATGACCACGGCTCCACCGTGCACCCGTTGGATGGACACGGCTATCTCCGAGCATTCACGATCGATGGCGCGAAAGGAGAGGTCAAGTTCATGGCTAAGTACATTAAGACCGAGGCTCAGCTTGAGGAGTGTGACCGTGAAACCGGCGAGTGGAAGTTCACTCACCGGGGGCCTTTCTCGGTGCTGAAAGGCGGGAAGAAGGTCGGGAACACGAAGGTGATGAAGAACGTGGCGAATACGAGCGTTTTGCGGTGGGGTGGTAGGCTGTTTTGTTTGTGGGAAGGTGGTGATCCGTATGAGATGGAATCGGCGTCGTTGGATACGGTAGGGAAGTTCGAGTTGATCAACGGCAGCGACAACAGCTGTGATGATTATCTGCCGTCGAGGATGGCGGTGCCGGCGGAAGAGGTGGTGGGTGACGGTGGCGTCGGTGGTGGTGTTTGGGATGTAGCGGCATCAATGTTGAAGCCTATACTATATGGAGTTTATAAGATGCCACCAAAGCGGCTTTTGTCTCATTACAAGATCGATCCTCGTAAGAATAGGCTTCTAATCATGTCGTGCAACGCCGAGGACATGTTGCTCCCACGCAGTAATTTTACTTTTTACGAATTTGACACAAATTTCAAGATGTTGCAAAAGAAAGAATACAATATCCCCGACCATCTTATGATCCATGATTGGGCCTTCACGGATACTCACTACATCTTGTTTGGCAATCGCATTAAACTTGACATTCCTGGATCGATGACGGCAGTGTGTGGGTATTCTCCGATGATATCGGCATTGTCAGTGAACCCAAGCAAGCCCACATCTCCGATTTACTTGCTTCCTCGATTCCCAAAAGATGAGTCGAGTAAGATCAACGGCGTAACAACAAGAGATTGGAGGGTACCCATTGAAGCTCCGTCTCAAATGTGGGTCCTTCATGTCGGAAATGCCTTTGAAGAGAAACATAAAAATGGGGATACACATATTGAGATACAAGCTAGTGGATGTTCATACGAATGGTTTAATTTTCAGAAAATGTTTGGATATGATTGGGAAAGTGGTAAATTGGACCCTTCAATGATGAATGCAAAGGAAGGGGTAGAAAAATTACCTCACCTTGTTCAAGTGTCGATAAATTTGGATGTGGAAGGAAATTGTCAAGATTGTTGTGTTAAACCTCTAAATGAAAAATGGAAAAGAGCAACAGATTTTCCGGTCATTAATCAAGAATATCCCGGCACTAGGAACACGTTCATTTATGCAGCAACATCATCTGGAATGCGTCGAGCGCTCCCACATTTCCCCTTTGATACGGTGGCAAAATTTAACACAATGAATAATACAATTCACACATGGTCCGTGGGGACACGAAGATTCATAGGCGAGCCCATTTTTGTCCCCAAGGGGGGCGAGGAAGATGATGGCTACCTTCTCATAGTAGAGTATGTGGTTTCCAGACAGAGTTGTTACTTAGTAATCCTAGATTCGAAGAAGATTGGGGAGCCAAATGCACTTGTTGCAAGACTTGAAGTACCGCGATACTTGAATTTCCCTCTTGGTTTTCATGGATTTTGGGCTTCCAGTGACCCACAAGCATAA 1932 47.88 MQAKLFHNTIPPKSPSPSPPAKLPPPSAVTLPDQLSVPAQAISISAPPNRHHHTPTLDDIIVDDKVAAFWDYQFLFVSQRSETHSPIALRVVEGGVPSDFPSGTYYLTGPGLFTDDHGSTVHPLDGHGYLRAFTIDGAKGEVKFMAKYIKTEAQLEECDRETGEWKFTHRGPFSVLKGGKKVGNTKVMKNVANTSVLRWGGRLFCLWEGGDPYEMESASLDTVGKFELINGSDNSCDDYLPSRMAVPAEEVVGDGGVGGGVWDVAASMLKPILYGVYKMPPKRLLSHYKIDPRKNRLLIMSCNAEDMLLPRSNFTFYEFDTNFKMLQKKEYNIPDHLMIHDWAFTDTHYILFGNRIKLDIPGSMTAVCGYSPMISALSVNPSKPTSPIYLLPRFPKDESSKINGVTTRDWRVPIEAPSQMWVLHVGNAFEEKHKNGDTHIEIQASGCSYEWFNFQKMFGYDWESGKLDPSMMNAKEGVEKLPHLVQVSINLDVEGNCQDCCVKPLNEKWKRATDFPVINQEYPGTRNTFIYAATSSGMRRALPHFPFDTVAKFNTMNNTIHTWSVGTRRFIGEPIFVPKGGEEDDGYLLIVEYVVSRQSCYLVILDSKKIGEPNALVARLEVPRYLNFPLGFHGFWASSDPQA 643
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nin6g00990 643 MobiDBLite consensus disorder prediction 12 27 - -
Nin6g00990 643 Pfam Retinal pigment epithelial membrane protein 77 637 IPR004294 GO:0016702(InterPro)
Nin6g00990 643 PANTHER BETA-CAROTENE DIOXYGENASE 66 638 IPR004294 GO:0010436(PANTHER)|GO:0016121(PANTHER)|GO:0016702(InterPro)|GO:0045549(PANTHER)
Nin6g00990 643 MobiDBLite consensus disorder prediction 1 27 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nin6g00990 K17912 9-cis-beta-carotene 9',10'-cleaving dioxygenase [EC:1.13.11.68]