Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Nin6g00994	ATGTCTCAAATCAACGGAAACGGTGTGGCGTCCTTGGTGACAATGGCTAGGCGCGCTCCTACCCCTGGGAAAGCCACGGTGCTAGCGATGGGCAAGGCCTTCCCTAGCCAACTCATTCCGCAAGAATGCTTGGTCGAGGGCTACTTTCGCGATACCAATTGCGATGATTCAGCCATGAAAGAGAAACTTGAACGTCTTTGTAAGACAACGACTGTGAAAACACGATACACGGTTATGTGCAAGGAGATTCTAGACAAATATCCGGAACTAGCAACTGAAGGGTCACCGACGATCGCTCAAAAGCTTGAGATAGCGAATCCAGCTGTTGTCAAAATGGCGAAGGAAGCTAGCGTAGCTTGTATCAAGGAATGGGGAAGGCCCGTGAGCGACATAACTCACATCGTGTACGTCTCCTCAAGCGAGATAAGGCTGCCAGGTGGTGACCTTTACCTGGCCAACGAATTGGGCCTCAGAAACGATGTGAATCGGGTCATGCTCTATTTCTTGGGATGCTATGGGGGTGTAACGGGCCTTCGAGTCGCAAAAGACATTGCAGAGAACAACCCGGGTAGTCGGGTTCTACTCACCACCTCGGAAACAACTATCTTGGGCTTTAGGCCACCAAACAAAACCCGGCCCTACGACTTAGTGGGAGCCGCCCTGTTTGGTGACGGAGCCGCTGCCGCGATTATCGGGTCAAACCCGATAATCGGGGCCGAGTCCCCATTCATGGAACTGAACCATGCAGCTCAGCAATTCCTGCCAGGGACCCACAATGTGATCGATGGGCGGTTAACCGAGGAGGGGATAAATTTCAAACTCGGGAGGGATTTACCACAAAAGATAGAGGACAACATACAAGGGTTTTGCAACAAGTTGATGAGGAGGGGTGGTGGTTGTGGTGGTGTTGTGGGGGAGTTCAATGACTTGTTCTGGGTGGTTCACCCTGGCGGTCCGGCGATATTGAACCGGTTGGAGAATGTGTTGAACCTTAGAGGTGAGAAGCTAGATTGTAGCAGGAGGGCATTGATGGATTTTGGGAATGTGAGCAGTAATACTGTGTTTTATGTGATGGAGTATATGAGGGAGGAAATGAAGATGAAGAAAGAAAATGGGGAAGAATGGGGATTGGCTTTGGCTTTTGGACCTGGGATCACTTTTGAAGGCATTCTCCTGCGCAATTTGCAGTAA	1191	50.38	MSQINGNGVASLVTMARRAPTPGKATVLAMGKAFPSQLIPQECLVEGYFRDTNCDDSAMKEKLERLCKTTTVKTRYTVMCKEILDKYPELATEGSPTIAQKLEIANPAVVKMAKEASVACIKEWGRPVSDITHIVYVSSSEIRLPGGDLYLANELGLRNDVNRVMLYFLGCYGGVTGLRVAKDIAENNPGSRVLLTTSETTILGFRPPNKTRPYDLVGAALFGDGAAAAIIGSNPIIGAESPFMELNHAAQQFLPGTHNVIDGRLTEEGINFKLGRDLPQKIEDNIQGFCNKLMRRGGGCGGVVGEFNDLFWVVHPGGPAILNRLENVLNLRGEKLDCSRRALMDFGNVSSNTVFYVMEYMREEMKMKKENGEEWGLALAFGPGITFEGILLRNLQ	396

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Nin6g00994	396	CDD	CHS-like	25	392	-	-
	Nin6g00994	396	Pfam	Chalcone and stilbene synthases, C-terminal domain	245	395	IPR012328	-
	Nin6g00994	396	FunFam	Chalcone synthase 1	243	396	-	-
	Nin6g00994	396	SUPERFAMILY	Thiolase-like	15	239	IPR016039	GO:0016746(InterPro)
	Nin6g00994	396	Gene3D	-	2	242	IPR016039	GO:0016746(InterPro)
	Nin6g00994	396	Pfam	Chalcone and stilbene synthases, N-terminal domain	17	235	IPR001099	-
	Nin6g00994	396	PIRSF	PKS-III	10	396	IPR011141	GO:0009058(InterPro)\|GO:0016747(InterPro)
	Nin6g00994	396	Gene3D	-	243	394	IPR016039	GO:0016746(InterPro)
	Nin6g00994	396	FunFam	Chalcone synthase 2	9	242	-	-
	Nin6g00994	396	PANTHER	HYDROXYMETHYLGLUTARYL-COA SYNTHASE	18	394	IPR011141	GO:0009058(InterPro)\|GO:0016747(InterPro)\|GO:0016747(PANTHER)\|GO:0030639(PANTHER)
	Nin6g00994	396	SUPERFAMILY	Thiolase-like	242	393	IPR016039	GO:0016746(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Nin6g00994	-	-

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Nin	Nin-Chr1:16668151	Nin6g00994	Nin-Chr6:12059377	dispersed
	Nin	Nin-Chr6:12059377	Nin9g01659	Nin-Chr9:27828606	dispersed

Gene Family Members

Select	Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
	Nin1g01357	.	13	393	CHS gene family	AT5G13930	39.426	2.08e-95	289.0
	Nin4g00014	.	3	394	CHS gene family	AT5G13930	84.949	0.0	703.0
	Nin4g00017	.	3	394	CHS gene family	AT5G13930	84.949	0.0	703.0
	Nin4g00018	.	107	394	CHS gene family	AT5G13930	88.889	0.0	535.0
	Nin4g00019	.	3	378	CHS gene family	AT5G13930	84.574	0.0	669.0
	Nin6g00994	.	5	393	CHS gene family	AT5G13930	39.899	3.18e-97	294.0
	Nin6g01134	.	8	395	CHS gene family	AT5G13930	78.351	0.0	640.0
	Nin7g02721	.	8	395	CHS gene family	AT5G13930	81.186	0.0	665.0
	Nin9g01657	.	8	395	CHS gene family	AT5G13930	77.835	0.0	632.0
	Nin9g01659	.	8	395	CHS gene family	AT5G13930	78.351	0.0	637.0