AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Nin6g01067 | ATGTGCGATGCCCTTTTCCTCAATTTTGCTGATTTCTTTTCTACTGTTTGCGTGGATTTGAAGAAATCGAAATTTTCGGCTGCTAGGGCTTCATCTGATGATATACTGCAAGCAGAAATGGAGAGGATTCATGAATCAAAAGTGTTTCCTGGACAGATTCCCATTATGCCCAAATTCCCCAGTAGGCACTTGTCTTTTGTAAGGGAGGATGTGGGTCAAGCCAATGCTCTTGAATTTCAGTTTTCGGATTCACCTATAGATGTTGAGAAATGGAAGGGGAAGCACTCTCTGCTGGAGAATGAGGAGCTTATGCCTGATATTACTGTTACATCTAAGGGAAGTAGTGATTCATTTGATGAGGCTGGTTCTACCTCCTTTAATGGCGCTAGTCATCCCCCAGAACCTATTGATATAGATCTAATGAGACCGGTATGTGTACCCATTGCGCAAACTAAATCAGATGGTAAATGCTTGATGAAGAGCATGTCTATGAAGGGTCCTTTTCTAGAAGATCTATCAATTAGGGTTCCTCCCCGCATTAAACAGAGTCCGTCGCTTCTTTCACCGGCAGAGAGCTTGATCGAAGAGCCAAGTGATTTGGGGTTAGGGGCTGTGTCCTCTCCGTTTGCAGTACCTCGACCATCACAGAATGTAGAGTCTGAGGAGAAAGCATGTATTTGGGATGCTTCTTTGCCCCCTAGTGGTAATGTAAGTCCACATAGCAGCATTGACAGTACTGGTGTTGTAACGGCTATGAGCATCGTCAATAGCTGCACCACTACGTATCGGAGTGATGGGATGATGAGTGATGGAATGCTCAGTGTGGATAGGAACTATGAGAGTACCAAAGGGAGCATTCGTGGGGATTCACTGGAGAGTGGCAAAACTAGCATCAGTCGAGCGAGTGATAGTAGTGGTCTTAGTGATGATAGTAATTGGAGCAACTTTACAGGGAGTGCTAATAAACCTCACAAAGGAAATGACCCTAGGTGGAAAGCTATTCTTGCTATTAGGGCACGAGATGGGCTTCTAGGAATGAGTCATTTCAGGTTGCTGAGACGCCTTGGCTGTGGTGATATTGGCAGTGTATATCTATCAGAACTGAGTGGCACACGTTGCTATTTCGCAATGAAGGTGATGGACAAAGCTTCCCTTGCCAGCAGAAAAAAGTTGACCAGAGCTCAGACCGAGAGAGAGATATTGCAGTTGCTGGATCATCCGTTCTTGCCGACCTTGTACACCCATTTTGAAACAGACAGATTCTCGTGTTTGGTCATGGAATATTGCCCAGGAGGTGACCTGCACACCTTGAGACAGCGGCAACCTGGAAAACATTTCTCAGAGTATGCAGCACGGTTTTATGCTGCAGAGGTTCTCTTAGGGCTCGAGTATCTCCATATGCTAGGAGTTGTTTACAGGGACTTGAAACCCGAAAATGTTCTGGTACGAGATGATGGCCACATAATGCTCTCAGATTTCGATCTCTCTCTAAGATGTGCCGTTTCACCCACCCTCATCAAGTCCTCTCTAGATTCTGATCCTTCAAAACGAGGAGTTGGTGGTTCGTTTTGCGTCCAGCCTGCTTGTATTGAGCCCTCATCAGTTTGCATACAGCCAGCGTGTTTCCTCCCTCGACTTTTCCCTCAGAAAAGCAAAAAGAAGAATACCCGAAAATCCCGTGCCGAAACTGGATTATTCTCCAATACACTCCCTGAACTTGTTGCCGAGCCCACTGCAGCCCGGTCTATGTCATTTGTCGGGACCCATGAGTATTTAGCGCCAGAAATCATCAAGGGCGAGGGACATGGAAGTGCAGTGGATTGGTGGACATTCGGCATATTTTTGCACGAGTTATTATACGGTAAAACTCCTTTCAAAGGATCAGGAAACCGAGCCACATTGTTCAACGTAGTCGGGCAGCAGCTCAAGTTCCCTGACTCGCCTGCGACTAGTTACGCGAGCCGAGACCTGATCCGGGGCTTGCTCGTGAAGGAGCCAATGAACCGGCTTGGAGTGAAGAGAGGAGCCACTGAGATCAAACAGCATCCTTTCTTCGAAGGCGTAAACTGGGCTTTGATCCGGTGCAGTACTCCACCTGAAGTACCACGGCCCGTGGAGGCTGAGCCGCCTGCAAAATATGGGACACTAGACACGGTAGGAGTCGGAAACAACAGTAAAAGGATGGCCGGGCCGGACCCGATGAAACCTGGAGGTAAATATCTGGACTTTGAGTTCTTTTAG | 2241 | 47.26 | MCDALFLNFADFFSTVCVDLKKSKFSAARASSDDILQAEMERIHESKVFPGQIPIMPKFPSRHLSFVREDVGQANALEFQFSDSPIDVEKWKGKHSLLENEELMPDITVTSKGSSDSFDEAGSTSFNGASHPPEPIDIDLMRPVCVPIAQTKSDGKCLMKSMSMKGPFLEDLSIRVPPRIKQSPSLLSPAESLIEEPSDLGLGAVSSPFAVPRPSQNVESEEKACIWDASLPPSGNVSPHSSIDSTGVVTAMSIVNSCTTTYRSDGMMSDGMLSVDRNYESTKGSIRGDSLESGKTSISRASDSSGLSDDSNWSNFTGSANKPHKGNDPRWKAILAIRARDGLLGMSHFRLLRRLGCGDIGSVYLSELSGTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLGLEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKSSLDSDPSKRGVGGSFCVQPACIEPSSVCIQPACFLPRLFPQKSKKKNTRKSRAETGLFSNTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLKFPDSPATSYASRDLIRGLLVKEPMNRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPVEAEPPAKYGTLDTVGVGNNSKRMAGPDPMKPGGKYLDFEFF | 746 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Nin6g01067 | 746 | MobiDBLite | consensus disorder prediction | 283 | 326 | - | - | |
| Nin6g01067 | 746 | FunFam | Serine-threonine-protein kinase D6PK-like | 347 | 432 | - | - | |
| Nin6g01067 | 746 | Pfam | Protein kinase domain | 350 | 499 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Nin6g01067 | 746 | Pfam | Protein kinase domain | 582 | 685 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Nin6g01067 | 746 | Gene3D | Transferase(Phosphotransferase) domain 1 | 581 | 702 | - | - | |
| Nin6g01067 | 746 | ProSiteProfiles | Protein kinase domain profile. | 349 | 685 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Nin6g01067 | 746 | SUPERFAMILY | Protein kinase-like (PK-like) | 331 | 709 | IPR011009 | - | |
| Nin6g01067 | 746 | MobiDBLite | consensus disorder prediction | 283 | 322 | - | - | |
| Nin6g01067 | 746 | MobiDBLite | consensus disorder prediction | 108 | 134 | - | - | |
| Nin6g01067 | 746 | PANTHER | FLIPPASE KINASE 1-RELATED | 216 | 706 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
| Nin6g01067 | 746 | Gene3D | Transferase(Phosphotransferase) domain 1 | 433 | 500 | - | - | |
| Nin6g01067 | 746 | ProSitePatterns | Serine-Threonine protein kinases active-site signature. | 470 | 482 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Nin6g01067 | 746 | FunFam | serine-threonine-protein kinase D6PK-like | 433 | 500 | - | - | |
| Nin6g01067 | 746 | MobiDBLite | consensus disorder prediction | 705 | 733 | - | - | |
| Nin6g01067 | 746 | SMART | serkin-6 | 349 | 685 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Nin6g01067 | 746 | FunFam | serine-threonine-protein kinase D6PK-like | 580 | 703 | - | - | |
| Nin6g01067 | 746 | CDD | STKc-phototropin-like | 347 | 709 | - | - | |
| Nin6g01067 | 746 | Gene3D | Phosphorylase Kinase; domain 1 | 347 | 432 | - | - | |
| Nin6g01067 | 746 | MobiDBLite | consensus disorder prediction | 108 | 130 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Nin6g01067 | K08286 | protein-serine/threonine kinase [EC:2.7.11.-] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Nin | Nin-Chr4:5317251 | Nin6g01067 | Nin-Chr6:13557583 | dispersed | |
| Nin | Nin-Chr4:48653016 | Nin6g01067 | Nin-Chr6:13557583 | dispersed | |
| Nin | Nin-Chr6:13557583 | Nin7g01459 | Nin-Chr7:31016803 | dispersed | |
| Nin | Nin-Chr6:13557583 | Nin6g02969 | Nin-Chr6:46029648 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Nin1g00641 | . | 350 | 405 | AGC Kinase gene family | AT4G33080 | 67.241 | 1.33e-20 | 83.6 | |
| Nin1g00691 | . | 466 | 579 | AGC Kinase gene family | AT3G45780 | 46.491 | 9.91e-30 | 119.0 | |
| Nin1g02678 | . | 134 | 234 | AGC Kinase gene family | AT5G58140 | 44.545 | 1.36e-21 | 97.8 | |
| Nin2g00771 | . | 117 | 167 | AGC Kinase gene family | AT3G08720 | 49.02 | 1.22e-08 | 49.3 | |
| Nin2g00772 | . | 168 | 444 | AGC Kinase gene family | AT3G08720 | 74.101 | 5.59e-158 | 447.0 | |
| Nin2g00996 | . | 3 | 505 | AGC Kinase gene family | AT5G09890 | 77.362 | 0.0 | 819.0 | |
| Nin2g01199 | . | 1 | 1002 | AGC Kinase gene family | AT1G45160 | 51.848 | 0.0 | 971.0 | |
| Nin3g00194 | . | 1 | 564 | AGC Kinase gene family | AT2G20470 | 75.132 | 0.0 | 868.0 | |
| Nin3g01903 | . | 11 | 518 | AGC Kinase gene family | AT4G33080 | 79.223 | 0.0 | 844.0 | |
| Nin3g01953 | . | 135 | 269 | AGC Kinase gene family | AT5G58140 | 37.5 | 4.86e-21 | 95.9 | |
| Nin3g02420 | . | 11 | 246 | AGC Kinase gene family | AT2G26700 | 66.667 | 2.26e-107 | 318.0 | |
| Nin3g02559 | . | 87 | 153 | AGC Kinase gene family | AT2G19400 | 52.055 | 8.64e-14 | 64.7 | |
| Nin3g02743 | . | 2 | 242 | AGC Kinase gene family | AT3G14370 | 63.953 | 1.72e-102 | 306.0 | |
| Nin3g03478 | . | 1 | 468 | AGC Kinase gene family | AT3G08720 | 68.71 | 0.0 | 674.0 | |
| Nin4g00259 | . | 98 | 586 | AGC Kinase gene family | AT5G47750 | 69.215 | 0.0 | 689.0 | |
| Nin4g00362 | . | 98 | 294 | AGC Kinase gene family | AT5G47750 | 67.839 | 8.39e-83 | 261.0 | |
| Nin4g00560 | . | 70 | 499 | AGC Kinase gene family | AT5G40030 | 77.701 | 0.0 | 706.0 | |
| Nin4g00956 | . | 353 | 405 | AGC Kinase gene family | AT4G33080 | 73.585 | 5.46e-23 | 88.2 | |
| Nin4g02247 | . | 56 | 910 | AGC Kinase gene family | AT5G58140 | 71.444 | 0.0 | 1276.0 | |
| Nin4g02428 | . | 3 | 480 | AGC Kinase gene family | AT4G33080 | 75.105 | 0.0 | 754.0 | |
| Nin4g02584 | . | 40 | 263 | AGC Kinase gene family | AT5G04510 | 23.431 | 8.36e-10 | 61.2 | |
| Nin4g02631 | . | 65 | 586 | AGC Kinase gene family | AT5G47750 | 79.699 | 0.0 | 840.0 | |
| Nin6g01067 | . | 68 | 765 | AGC Kinase gene family | AT2G44830 | 70.464 | 0.0 | 950.0 | |
| Nin6g02969 | . | 85 | 586 | AGC Kinase gene family | AT5G47750 | 83.366 | 0.0 | 853.0 | |
| Nin7g00015 | . | 112 | 361 | AGC Kinase gene family | AT1G79250 | 78.906 | 6.82e-141 | 413.0 | |
| Nin7g00318 | . | 1 | 451 | AGC Kinase gene family | AT3G44610 | 64.468 | 0.0 | 561.0 | |
| Nin7g00319 | . | 50 | 934 | AGC Kinase gene family | AT3G52890 | 44.493 | 0.0 | 634.0 | |
| Nin7g01459 | . | 1 | 934 | AGC Kinase gene family | AT3G52890 | 48.444 | 0.0 | 756.0 | |
| Nin7g01830 | . | 124 | 245 | AGC Kinase gene family | AT4G13000 | 54.745 | 3.27e-39 | 134.0 | |
| Nin7g01974 | . | 16 | 227 | AGC Kinase gene family | AT3G20830 | 57.339 | 2.34e-72 | 224.0 | |
| Nin7g02498 | . | 71 | 211 | AGC Kinase gene family | AT3G44610 | 65.248 | 3.43e-61 | 196.0 | |
| Nin7g02499 | . | 303 | 424 | AGC Kinase gene family | AT3G44610 | 75.41 | 3.13e-65 | 203.0 | |
| Nin8g01374 | . | 81 | 303 | AGC Kinase gene family | AT5G47750 | 77.13 | 1.80e-110 | 331.0 | |
| Nin8g01690 | . | 12 | 421 | AGC Kinase gene family | AT3G25250 | 56.459 | 1.07e-161 | 459.0 | |
| Nin8g01748 | . | 1 | 886 | AGC Kinase gene family | AT3G45780 | 69.454 | 0.0 | 1184.0 | |
| Nin9g00721 | . | 4 | 486 | AGC Kinase gene family | AT3G10540 | 81.967 | 0.0 | 825.0 | |
| Nin9g01095 | . | 1 | 1284 | AGC Kinase gene family | AT3G17850 | 65.221 | 0.0 | 1594.0 | |
| Nin9g02170 | . | 1 | 458 | AGC Kinase gene family | AT3G08720 | 66.034 | 0.0 | 636.0 | |
| Nin9g02352 | . | 30 | 1161 | AGC Kinase gene family | AT5G62310 | 63.127 | 0.0 | 1388.0 | |
| Nin9g02884 | . | 279 | 429 | AGC Kinase gene family | AT3G08720 | 36.601 | 1.41e-18 | 88.6 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Nin | Pkinase | 9.2e-37 | CL0016 | PK | AGC_RSK-2 |