AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Nin6g01075 | ATGGCGATTCTCCGATACCCGTTATTCACTTCTCTCCTTAAACCCCACAAAACCCACTTCTCTTTCCTGTTCACTTCTAAACCAAACAACCCACTCTTCCATTCCCCGTTTCGGTTCAGAACCGCTGCAGTTTCAGGGTTTAGTACTTCTGCAATTCCTCAACAACTGGAAAAAGAACCAAACCCAGAAACCTTGTCGGGTAGACCTTCCATACCCACTTTTCAACAAGCCATTCAGCGTCTCCAGGATTACTGGGCATCTGTTGGTTGTGCTGTAATGCAATGCAGCAATACTGAGGTTGGAGCTGGAACTATGAATCCTCTGACGTTTTTAAGGGTTCTTGGTCCAGAGCCATGGAATGTTGCGTATGTAGAGCCAAGTGTCCGGCCAGATGATAGTCGTTACGGAGAAAATCCTAATCGGCTTCAACGCCATACTCAATTTCAGGTTATATTAAAGCCAGATCCTGGAAATTCGCAAGACTTATTCCTCCGAAGCTTATCAGCTTTAGGTATTGATGTTAATGAGCACGACATTCGCTTTGTGGAGGACAATTGGGAAAGCCCGGTGCTTGGTGCTTGGGGATTGGGCTGGGAGATTTGGATGGATGGCATGGAGATCACTCAGTTTACCTACTTCCAGCAGGCTGGGAGTCTTCAGCTGATGCCGGTATCGGTTGAAATTACTTATGGGCTTGAACGTATCCTAATGTTACTTCAGGGAGTTGACCATTTTAAGAAGATCAAATATGCTGATGGAATTACTTATGGAGAACTTTTCTCAGAGAATGAGAGGGAAATGAGTGCATATAATCTCGAGCATGCCAGTGTTGATCATGTTCAGAAACACTTTGATCTTTTTGAGGCAGAAGCACGTTCTTTGCTCAATTTAGGCCTTGCAATACCTGCGTATGATCAGCTTTTAAAGACCTCCCATGCTTTTAACATCTTAGATTCTCGAGGCTTTGTTGGGGTAACAGAACGTGCTCGTTATTTTGCGAGGATGCGCAGTTTAGCTCGCCAATGTGCCATGCTCTGGTCGAAGACAAGGGAGTCACTTGGTTATCCGGTGGGCATCGCTCTACAACCTGATAATCTATCTTTACCTACAGAGCTTCTTAATGCAGAAGCCAAAAAGGTGTCTATGGAACCCAGGGTATTTCTTCTTGAAATTGGGACAGAAGAGCTGCCACCAAATGATGTTGTTAGTGCAACCCATCAACTCAAAGATCTAATCGTGCAGTTATTAGAAAAACAAAGGTTAAGTCACGGAGAAGTGCAGGCATTTGGCACACCGCGGAGACTTGTGATTCATGTTGAGTCACTGTGCTCCAAGCAACTAGCAAATGAGGTTGAGGTTCGAGGACCTCCCGCTTCAAAGGCTTTTGATCCTCAAGGAAATCCAACAAAGGCAGCGGAAGGTTTTTGCAGTAGATATTCTGCCCCATTAGACTCATTATATAGAAGGATGGAAGGTAAGACGGAATATGTCTATGTTCGCGTGATGGAATCTGCACAACTTGCTTTGGAGATTCTGTCGAAAGAGTTGCCCGGTACAATTGCTAAATTGTCGTTCCCCAAATCCATGCGCTGGAACTCTGAGGTAATGTTTAGCAGACCAGTTCGTTGGATATTGGCGCTTCATGGAGATGCAGTTGTTCCTTTTATGTTTGCTGGTGTTTTAAGTGGAAATGTATCTCACGGCCTTCGGAATCGTTCATCAGCCACTGTAATGGTAGAAAGTGCAGAATCTTATGCCTATGTATTGCGGCATGCTGGAATATCTGTTGATCCTGAGCAACGAAAGAAAAAAATTTTAGAACAGTCCAAGACTTTGGCGGAAAATGTTGGTGGTAGTATTGTCATGCAGAGCAGCTTACTTGATGAGGTAATAAATCTCGTAGAGGCACCTGTTCCAGTACTTGGAAAGTTCAATGAGTCTTTCTTAGTGCTCCCAAAAGATTTGTTAATAATGGTTATGCAGAAGCATCAGAAATACTTCGCCCTGACTGATGATAATGGAAATCTGTTGCCGTATTTCATCGCTGTTGCAAACGGGGCTATTAACGAGTCAGTAGTAAGGAAAGGGAATGAAGCTGTACTCAGGGCTAGGTATGAAGATGCTAAGTTTTTCTATGAGTTGGACACTAGTAAAAGGTTTACTGAATTCCGGAGCCAACTGAAAGGGATTCTTTTCCATGAGAAGCTTGGGACAATGATGGACAAGATGACACGTGTCCAGAGAACTGTTAATGAACTAGGCTTGTATCTAGGATTTAGTGAAGATAAGCTCCAGATTGTTCAGGATGCTGCAGCCTTGGCTATGTCAGATCTTGCGACTGCTGTTGTTACAGAATTTACTTCTCTCTCAGGAATAATGGCACGCCACTATGCGCTTCGAGAAGGATACTCGGAGGAGGTTGCTGAGGCATTGTTTGAAATAACACTTCCTCGATTTTCTGGTGATATACTTCCGAATACTGATGCAGGAGTCGTACTAGCAATTGCGGACAGGTTAGATAGCTTAGTTGGCTTGTTTGCAGCTGGTTGTCAGCCAAGCTCCAGTAATGATCCATTTGGCCTGAGGAGGATCTCATATGGTCTTGTTCAAGTATTAGTGGAGAAAAATAGAAACTTAGATCTACGACATGCTTTGGGAGTTGCTGCCACTGTCCAGTCTATAGAAGTAAACACGAGAATAATAGATGAAGTACATCAATTTGTAACACGGAGACTAGAGCAATTTCTGGTTGACAAGGGATTGAATCCAGAAGTGGTTCGTGCTGTTCTGGCAGAGCGTGCAAACTGGCCTTCTCTGGCAGCAAACTCAGCATATAAAATGGATGTTTTGTCAAGAGGTGAACTTTTGCCCAAGGTTGTTGAAGCATATTCCCGTCCAACAAGAATTGTACGTGGAAAGGATGTCGATGCTAATATAGAGGTGGATGAGGCATTGTTTGAAACAAATGAAGAGAGAGCTTTATGGAGGATTTTCTCTTCCTTAAGAAGCAAGGTTCATCCTGGTGTTGAGGTAGATGACTTTGTTGAAACATCTTCACAACTAATTCAGCCATTGGAAGACTTCTTCAATAATGTATTTGTGATGGTGGAAGATGAAAAAATAAGGAAAAACAGGCTTGCCCTGCTCAAAGAAATCTCTGATCTTCCACGAGGAATTATTGATCTCTCGGTTTTGCCAGGATTCTGA | 3207 | 43.41 | MAILRYPLFTSLLKPHKTHFSFLFTSKPNNPLFHSPFRFRTAAVSGFSTSAIPQQLEKEPNPETLSGRPSIPTFQQAIQRLQDYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSVRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFLRSLSALGIDVNEHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLMPVSVEITYGLERILMLLQGVDHFKKIKYADGITYGELFSENEREMSAYNLEHASVDHVQKHFDLFEAEARSLLNLGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFARMRSLARQCAMLWSKTRESLGYPVGIALQPDNLSLPTELLNAEAKKVSMEPRVFLLEIGTEELPPNDVVSATHQLKDLIVQLLEKQRLSHGEVQAFGTPRRLVIHVESLCSKQLANEVEVRGPPASKAFDPQGNPTKAAEGFCSRYSAPLDSLYRRMEGKTEYVYVRVMESAQLALEILSKELPGTIAKLSFPKSMRWNSEVMFSRPVRWILALHGDAVVPFMFAGVLSGNVSHGLRNRSSATVMVESAESYAYVLRHAGISVDPEQRKKKILEQSKTLAENVGGSIVMQSSLLDEVINLVEAPVPVLGKFNESFLVLPKDLLIMVMQKHQKYFALTDDNGNLLPYFIAVANGAINESVVRKGNEAVLRARYEDAKFFYELDTSKRFTEFRSQLKGILFHEKLGTMMDKMTRVQRTVNELGLYLGFSEDKLQIVQDAAALAMSDLATAVVTEFTSLSGIMARHYALREGYSEEVAEALFEITLPRFSGDILPNTDAGVVLAIADRLDSLVGLFAAGCQPSSSNDPFGLRRISYGLVQVLVEKNRNLDLRHALGVAATVQSIEVNTRIIDEVHQFVTRRLEQFLVDKGLNPEVVRAVLAERANWPSLAANSAYKMDVLSRGELLPKVVEAYSRPTRIVRGKDVDANIEVDEALFETNEERALWRIFSSLRSKVHPGVEVDDFVETSSQLIQPLEDFFNNVFVMVEDEKIRKNRLALLKEISDLPRGIIDLSVLPGF | 1068 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Nin6g01075 | 1068 | Gene3D | Class II aaRS and biotin synthetases; domain 2 | 276 | 355 | - | - | |
| Nin6g01075 | 1068 | ProSiteProfiles | Heterodimeric glycyl-transfer RNA synthetases family profile. | 741 | 1030 | IPR006194 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Nin6g01075 | 1068 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 147 | 167 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Nin6g01075 | 1068 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 178 | 202 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Nin6g01075 | 1068 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 227 | 242 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Nin6g01075 | 1068 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 126 | 141 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Nin6g01075 | 1068 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 312 | 328 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Nin6g01075 | 1068 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 204 | 224 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Nin6g01075 | 1068 | Hamap | Glycine--tRNA ligase alpha subunit [glyQ]. | 72 | 352 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Nin6g01075 | 1068 | Pfam | DALR anticodon binding domain | 961 | 1052 | IPR008909 | GO:0004814(InterPro)|GO:0005524(InterPro)|GO:0006420(InterPro) | |
| Nin6g01075 | 1068 | Gene3D | Bira Bifunctional Protein; Domain 2 | 64 | 275 | IPR045864 | - | |
| Nin6g01075 | 1068 | SUPERFAMILY | Class II aaRS and biotin synthetases | 73 | 352 | IPR045864 | - | |
| Nin6g01075 | 1068 | PANTHER | GLYCYL-TRNA SYNTHETASE | 73 | 1068 | IPR006194 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0005739(PANTHER)|GO:0006426(InterPro)|GO:0009570(PANTHER) | |
| Nin6g01075 | 1068 | NCBIfam | glycine--tRNA ligase subunit alpha | 73 | 357 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Nin6g01075 | 1068 | FunFam | Glycine--tRNA ligase, chloroplastic-mitochondrial 2 | 276 | 355 | - | - | |
| Nin6g01075 | 1068 | ProSiteProfiles | Heterodimeric glycyl-transfer RNA synthetases family profile. | 73 | 347 | IPR006194 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Nin6g01075 | 1068 | NCBIfam | glycine--tRNA ligase subunit beta | 387 | 1065 | IPR015944 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Nin6g01075 | 1068 | CDD | GlyRS-alpha-core | 73 | 351 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Nin6g01075 | 1068 | Pfam | Glycyl-tRNA synthetase alpha subunit | 74 | 351 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Nin6g01075 | 1068 | FunFam | Glycine--tRNA ligase alpha subunit | 67 | 275 | - | - | |
| Nin6g01075 | 1068 | Pfam | Glycyl-tRNA synthetase beta subunit | 387 | 931 | IPR015944 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Nin6g01075 | 1068 | SUPERFAMILY | HD-domain-PDEase-like | 720 | 870 | - | - | |
| Nin6g01075 | 1068 | Hamap | Glycine--tRNA ligase beta subunit [glyS]. | 384 | 1065 | IPR015944 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Nin6g01075 | K14164 | glycyl-tRNA synthetase [EC:6.1.1.14] | ||||
| Nin6g01075 | K01879 | glycyl-tRNA synthetase beta chain [EC:6.1.1.14] |