AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nin6g01389 ATGAAACGCTCCGCATTTCTTCAACAACTCTTAGTACTACTCGTTGTAGTGATCTTGCTTCGAAAACCGTGCTCTTCCTCTTCTACACCGATTCAGCCCGGAATTTGCGCCGATCCGATGGCAACCCTGGGCGGATTACAGCAGCACTCAACTTCCAACACCACCACCGCAGATGTTGAAAGCCTTGGTCGATTTGCCGTCGAAGAGCACAACAAGAAAGAGAACGCCCTGGTCAAGTTCGTAAGGGTCGTGCAGGCCCAGGAACAAGTGGTTGCTGGGACATTGCATCATCTTACTTTAGAGGCCGAGGATGCAGGGAAGAAGAAACTATATGAGGCTAAGGTCTGGGTAAAGCCGTGGATGAACTTCAAGGAACTGCAGGAGTTTAAGCATACTGGTGACGCCACCAAATTTACCTCTTCTGATTTTGGTGTCAAGAAAGATGATCATAGCTCAGGATTGCGAGAGGTGCCTGTGCAAGATCCCATAGTCCAAGATGCTGCTAACTACGCAATTAAAGCGATACAGCAAAGATCCAACTCCTTGTTGCCTTATAAATTACAAGAGATCATTCATGCAAAGGCAGAGGAAGCAGATGAATCTGTGAAGTTTGATATGCTTCTCAGGGTCCACAGAGGAGAGAAGGAAGAACATTTTAAAATTAAGGCTGAGTCTGAGTTCGTTCATCTGGCCCTTAACGGCTTGACCATAGAACTCCGGAAAAAGTTGAACAATACATCGTCCGAGGAATGCCAATTTGGGTTCAGAGTGCAAGATAAGAAGAAAGCTCCTTCTGGGAGTTTATGCCCAGTTAGTAATGGTTGGCACCAGTTCGAAGCTAATACGTTAACATAG 855 46.2 MKRSAFLQQLLVLLVVVILLRKPCSSSSTPIQPGICADPMATLGGLQQHSTSNTTTADVESLGRFAVEEHNKKENALVKFVRVVQAQEQVVAGTLHHLTLEAEDAGKKKLYEAKVWVKPWMNFKELQEFKHTGDATKFTSSDFGVKKDDHSSGLREVPVQDPIVQDAANYAIKAIQQRSNSLLPYKLQEIIHAKAEEADESVKFDMLLRVHRGEKEEHFKIKAESEFVHLALNGLTIELRKKLNNTSSEECQFGFRVQDKKKAPSGSLCPVSNGWHQFEANTLT 284
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nin6g01389 284 Pfam Aspartic acid proteinase inhibitor 53 131 IPR000010 GO:0004869(InterPro)
Nin6g01389 284 Gene3D - 27 135 - -
Nin6g01389 284 ProSitePatterns Cysteine proteases inhibitors signature. 88 101 IPR018073 -
Nin6g01389 284 SUPERFAMILY Cystatin-monellin 56 134 IPR046350 -
Nin6g01389 284 CDD CY 50 131 IPR000010 GO:0004869(InterPro)
Nin6g01389 284 Gene3D - 146 269 - -
Nin6g01389 284 PANTHER CYSTATIN FAMILY MEMBER 36 141 IPR027214 GO:0004869(InterPro)|GO:0004869(PANTHER)
Nin6g01389 284 SUPERFAMILY Cystatin-monellin 152 222 IPR046350 -
Nin6g01389 284 SMART CY-4 41 132 IPR000010 GO:0004869(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nin6g01389 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nin Nin-Chr6:22713205 Nin7g01221 Nin-Chr7:27652990 dispersed