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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nin7g02120 ATGGCGAGAAAACCTCTCCTAAATCTCCTCCTCTTCTTCTCACTCTCTCTCCTCGCAGTTTCCGCCGACGACGTACCCACCGTCTACGAGATCCTCCCTAAATTCGGTCTTCCGAGCGGTCTCTTGCCGGATTCCGTCAAGTCTTACTCTCTCTCCGAGGACGGAAGTTTCGTCGTCGAATTGGAGAAAGCTTGTTACATCAAGTTCGATTACCTCGTCTGGTACGACAAAAAGATCACCGGTAAGCTTAAGGTTGGGTCGATTAGTGATTTGAAAGGGATTGAGGTGCAGAAATTTTTTATTTGGCTCAACGTCGTTGAAATCAAGGTCGATTTGCCGAGTTCGGATAATATTTATTTCCAGGTTGGGATTATTAATAAGAAACTTGATATCGATCAGTTCGAGACTGTGCGTACTTGTCGCGACAAAGCCTATGTTTCTTGTCGCCGGTCGTCTCATTTGATCGCTGAGTTGCCAAATCCCGTCGATGAAGTCGAAATGCTGATCACAGAGTAA 516 46.12 MARKPLLNLLLFFSLSLLAVSADDVPTVYEILPKFGLPSGLLPDSVKSYSLSEDGSFVVELEKACYIKFDYLVWYDKKITGKLKVGSISDLKGIEVQKFFIWLNVVEIKVDLPSSDNIYFQVGIINKKLDIDQFETVRTCRDKAYVSCRRSSHLIAELPNPVDEVEMLITE 171
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nin7g02120 171 Gene3D - 16 144 IPR036758 -
Nin7g02120 171 SUPERFAMILY At5g01610-like 9 142 IPR036758 -
Nin7g02120 171 PANTHER T31J12.3 PROTEIN-RELATED 24 140 IPR007493 -
Nin7g02120 171 Pfam Protein of unknown function, DUF538 28 135 IPR007493 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nin7g02120 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nin Nin-Chr7:38140343 Nin7g02141 Nin-Chr7:38383871 dispersed
Nin Nin-Chr7:38140343 Nin7g02127 Nin-Chr7:38283894 proximal
Nin Nin-Chr7:38128969 Nin7g02120 Nin-Chr7:38140343 tandem