AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nin7g02507 ATGGCTGATTCTTTGATGACTAGTGTTTCAGCAGCATTGCTGAAGAAGGTGTTGGCTCTCGCCGCCAATGAGATCATCCTTTACTTCGGTTTCAAGAAAGATTTGGAAACCTTCCAGAAATCCCTGGAGTACATCCAAGCAGTGGTGTGTGATGCAGAGCGAAAGCAACTCACCAGTGAGGCCGTGAAGATTTGGGTGGAGGATCTGAAAGACGTGGCTGACAGAGCTGAACTGGTGCTGGATGAAATCGAGTACGAGATACTTCGTCGTAAGGTACGCGCAAAATTATCCTCCAACTCCATTCTATTTCGTTACCGGATGGCTCGTAAGATCAAGAACATCAACGATTGCTTTGCCCGGCTTGAAGAAAAAGCTGTTGTTCATAAATTTAAAGAAGAATTAGATGTTCCGGTACCACCGAACAAGAACAAGGAGACTGACTCACTCCTTGATGAATTCGTTGTTGTGGGGAGGGATGAGGATGCGGCCTCATTGATTCGAACTTTGACCGGGAGTACTACAGAAGAAAAGCTGATCATCATTCCTATTGTAGGGATGGGTGGGATCGGGAAGACGACACTCACTAGGCTCGTATACAATGATGTGAGTATCCAGAATCATTTTGATGTGAGGGTTTGGGTGTGTGTGGGTGTCAAGGTTGATGATGTTATGACTATACTCGAGCAAATTCTCGAATTTCTTACGAAAAAAAAGGAAGAAGTTCGAACTCGGGAAACTATAATTCAGAGCCTTAAAGAAAATCTGGAAGGGAAGAAGTATCTGTTGGTTCTTGATGATGTCTGGAACGAGGAAAGAGAGTTTTGGATAGATTTCAGGAGTTGTATGTTAAAAGCTAACAAAGCTTGTGGGAATTCCATCATTGTCACTACACGTAGCAAGGCACTCGCTGACAATGCTAGTCAGACATCTATGGTGCATTCTATTGATCAACTTTCGGATGATCTGTGTTGGTCCATCATCAACAAAAGAGTAATATTTCCTCATGGGGACCTGACAGAAGATCTCGTGGGCATAGGCAAGGAGATAGCGAAAATGTGTTGCGGTGTGCCATTGGCAGCAAAAGTGGTAGGAGGGTTGCTTCAGTCTAAAAAGGGAGTAGAGGAGTGGTTGTCGGTCCGAAATAGTTTGGTTTGGGGTTCCAGTCAGAAAGATCACGTTCTTAACATTTTGAAATTGAGTTACAATAATTTACCAAATCCACTTTTCAAACTCTGCTTTTCTTATTGTTCGATTTTCCGAAAGGACACTTCAATCAAGAAGGAGCAACTGATCCAGTACTGGATGGCTTTGGGATTCCTTGACGTAGTAAAAGGGGTAGGATACAAGGACATGGAGGATGTGGGTCACAAAATTTTCAATACTTTGACACAGAATTCCTTGTTCCAAGATGTTGAAAAGGATAAATACGGTAACATTATTAGTTGCAAGATGCATGATTTGGTGCACGATCTTGCACTCTCTATCTCGGGATCTCAATGCTTATGTTTGGAAGGTTCGATGAGCAATGACCCGATTCCAAGAGTTAAAGACCTAGCTCTGTTCCATGTTTGTGAAGAGATAGTGGATGAGGTGTTTAAGCAAGGGAAAGCAAGATACTTGCGTACATTGTTTTTGCTGGATTTTAGAGGCTACATACCCAAGCACATATCCCTGGAAAATTGTAGATGCTTGCGCCTTCTAGTCCTTAGGGATTCCAGCTTGAAACGGTTACCTGATTTATTCAGCAGGTTGATTCATCTTAGGTATCTTGAATTATATGCTTTTGAGGGATTAGATGTTTTGCCTAAATCCATTGGCAAGCTTTACCATTTGCAAACTTTAAAACTCCACAGGTGCAAGGATGAAATGACGCTTCCTATTGAAGTCGGAAATTTGATAAGCTTGAGACATCTTTATATTAATAGAAGGTACAACATTGCACTATTCAATATTGTGAGGTTTACTTGTCTCCGGACCTTGGAATACTTCCGCGTGGGTAAAGAGAAGGGGTGTTGCATTGAAGCGCTTGGTCCTTTGAAAAATCTTCGGGGCAAGCTACATTTGGACAATCTCGAGAACGTGAGCAGCAAAAGAGAAGCCCTAAGTGCTAATTTGATCGAAAAGTTAGATTTGAATAGGTTGGAATATGCTTGGAGTCGTGATACGGAAGGAAACCACGAGGATGTTTTGGAAGGACTCCAAGCTCCACCGAATTTAAAAGGCCTCGAGATTGATTGGTATATGGGTGACAAATTCCCAGAATGGGTGATGAAGATGGTTGTGATTGGTATGGATCAGAAGTTGTTGCCGCTTCACAATCTCGTGGATATAACATTCACTAATTGTGGAAGATGCCAGCATGTTCCCATGCTGGGGCAGCTCCCTCATCTTCAAGAGCTGAAGATGAGGGATATGGAGAGTGTGAGATGCATAGATGAATCATTCTACGGCTATAGTGGTGACAGTAGTAGTTCATCTGACAAACTACCAATGGTAATATTTCCTGCATTGAAAAGACTGGAAATAAAGGATATGAAAAATTTGGAGACGTGGATGGATGTGAATGTAACAAGGAACTATACGATAGGTAGAGGGGGAGGTAGTGGTGGTGGTTGGTCAGTGTTCCCACACTTGGAGGAGTTGTGCCTTAAGTGGTGCCCTATGATCAAATCTTTGCCTTACGAAGCTCTTAGGGATGTACGCCTGTCTCTCAGGTGTTTAGATATACAATACTGTGATATGTATGGACATCTAGCTTCGAATAGGTTGGTATATTCTTGGAGGGGAAATCGGGAAGGAGATCACATGGATGTTTATGAAGGATTCCAAGCTCCCCCGAATATAGATGTCCTGGTGATTGATGGCTATATGGGTGAGAATTTCCCAGAATGGATGATGAAGATGGCTGTGATTGGTATGGATCAGAAGTTGTTGCCGCTTCACAATCTAGTACATATAAAATTCTTTATGTGCGGAAGATGCGAGTGTGTTCCAATGCTAGGGCAGCTCCCTCATCTTCAAAAGTTGGAGATGGAGTATATGGAGAATGTGAGATGCATAGATGAATCATTCTACGGCTATCTTGGTGGTAGTAGCGGTTATGACAAACCACTAGCGGGGATATTCCCCGCATTAAAAAAATTGGTTATGACGAATATGAAAAATTTGGAGACATGGAGAGATGTAAATGTAACAAGAAAAGATACGATGGGTGGAGGGGGAGGTAGTGGTGGTGGTTGGTCGGTGTTCCCACACTTGGAGAAGTTGTACCTTAAGTGGTGCCCTAGGATCAAATCTTTGCCTTACGAAGCTCTTAGGGGTGCACATCTGTCTCTCAAGCGTTTAGTAATAAGTGGCTGTGATAGTCTGGGGACAATCCCAACCTTGCAGGGCTTCACATCCCTTGAACGATTTATTATGTCAAGTTACAATAGACTCACATGTTTACCAAAATTGCCATTCCATCATTCTCTTCGAGAATTACAAATATTTGGTACCTTTTGTATGCCAGAGGGGTACTTGAGTGACGTAGCCAACACGTTGGAGGAGTTGAGGATCGGCCCACTGTCATCTGAAGCCCAAGTTTTGAAACTCTGCCTCCAATCCATCATCCGAACCCCAATCTCTTCTCATTCTCCTACTTGTAGTAGTTTACAGCAACAATTGCAATCATCTCCCGTCCTTCGTAAATTAATATTGTCGGGACAGCGTCACTGGGACTGGATACCGGAGGAGGTCCGACACCTCACCGCCCTCTCTTATCTGCACATACAGTATTTTGGTTCGGTGGAAGCTTTGCCCGACTGGTTCGCCCACTTGTCGTCTCTTGAAGAATTATGGCTCTCCAATTGCGATCAACTGCAGAGTCTACCCTCCATGGAAGCTATGGGGCGACTCACCAAATTAAACACAATCACGATTCAGTGGTGCCCCCGATTAAAGGAAAGGGTTGCTCAAGGGTATGGCGCAGAGTGGTTCAAGGTTTCCACTGATTCCCCCAATAACCGAGCTATTTTAACAAGGAGCCATCAGGGTGATCAATAA 4044 43.42 MADSLMTSVSAALLKKVLALAANEIILYFGFKKDLETFQKSLEYIQAVVCDAERKQLTSEAVKIWVEDLKDVADRAELVLDEIEYEILRRKVRAKLSSNSILFRYRMARKIKNINDCFARLEEKAVVHKFKEELDVPVPPNKNKETDSLLDEFVVVGRDEDAASLIRTLTGSTTEEKLIIIPIVGMGGIGKTTLTRLVYNDVSIQNHFDVRVWVCVGVKVDDVMTILEQILEFLTKKKEEVRTRETIIQSLKENLEGKKYLLVLDDVWNEEREFWIDFRSCMLKANKACGNSIIVTTRSKALADNASQTSMVHSIDQLSDDLCWSIINKRVIFPHGDLTEDLVGIGKEIAKMCCGVPLAAKVVGGLLQSKKGVEEWLSVRNSLVWGSSQKDHVLNILKLSYNNLPNPLFKLCFSYCSIFRKDTSIKKEQLIQYWMALGFLDVVKGVGYKDMEDVGHKIFNTLTQNSLFQDVEKDKYGNIISCKMHDLVHDLALSISGSQCLCLEGSMSNDPIPRVKDLALFHVCEEIVDEVFKQGKARYLRTLFLLDFRGYIPKHISLENCRCLRLLVLRDSSLKRLPDLFSRLIHLRYLELYAFEGLDVLPKSIGKLYHLQTLKLHRCKDEMTLPIEVGNLISLRHLYINRRYNIALFNIVRFTCLRTLEYFRVGKEKGCCIEALGPLKNLRGKLHLDNLENVSSKREALSANLIEKLDLNRLEYAWSRDTEGNHEDVLEGLQAPPNLKGLEIDWYMGDKFPEWVMKMVVIGMDQKLLPLHNLVDITFTNCGRCQHVPMLGQLPHLQELKMRDMESVRCIDESFYGYSGDSSSSSDKLPMVIFPALKRLEIKDMKNLETWMDVNVTRNYTIGRGGGSGGGWSVFPHLEELCLKWCPMIKSLPYEALRDVRLSLRCLDIQYCDMYGHLASNRLVYSWRGNREGDHMDVYEGFQAPPNIDVLVIDGYMGENFPEWMMKMAVIGMDQKLLPLHNLVHIKFFMCGRCECVPMLGQLPHLQKLEMEYMENVRCIDESFYGYLGGSSGYDKPLAGIFPALKKLVMTNMKNLETWRDVNVTRKDTMGGGGGSGGGWSVFPHLEKLYLKWCPRIKSLPYEALRGAHLSLKRLVISGCDSLGTIPTLQGFTSLERFIMSSYNRLTCLPKLPFHHSLRELQIFGTFCMPEGYLSDVANTLEELRIGPLSSEAQVLKLCLQSIIRTPISSHSPTCSSLQQQLQSSPVLRKLILSGQRHWDWIPEEVRHLTALSYLHIQYFGSVEALPDWFAHLSSLEELWLSNCDQLQSLPSMEAMGRLTKLNTITIQWCPRLKERVAQGYGAEWFKVSTDSPNNRAILTRSHQGDQ 1347
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nin7g02507 1347 Coils Coil 66 86 - -
Nin7g02507 1347 FunFam Probable disease resistance protein At1g61300 140 310 - -
Nin7g02507 1347 FunFam Probable disease resistance protein At1g63360 401 494 - -
Nin7g02507 1347 CDD RX-CC-like 2 115 IPR038005 -
Nin7g02507 1347 Gene3D Ribonuclease Inhibitor 1190 1319 IPR032675 -
Nin7g02507 1347 Gene3D - 141 314 IPR027417 -
Nin7g02507 1347 PRINTS Disease resistance protein signature 180 195 - -
Nin7g02507 1347 PRINTS Disease resistance protein signature 606 622 - -
Nin7g02507 1347 PRINTS Disease resistance protein signature 353 367 - -
Nin7g02507 1347 PRINTS Disease resistance protein signature 254 268 - -
Nin7g02507 1347 SUPERFAMILY RNI-like 771 1016 - -
Nin7g02507 1347 Gene3D Ribonuclease Inhibitor 868 1070 IPR032675 -
Nin7g02507 1347 Gene3D - 11 123 - -
Nin7g02507 1347 Pfam Rx N-terminal domain 12 97 IPR041118 -
Nin7g02507 1347 Gene3D Ribonuclease Inhibitor 1074 1166 IPR032675 -
Nin7g02507 1347 PANTHER DISEASE RESISTANCE PROTEIN RP 23 912 IPR044974 GO:0006952(InterPro)|GO:0098542(PANTHER)
Nin7g02507 1347 Gene3D - 317 400 IPR042197 -
Nin7g02507 1347 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 416 IPR027417 -
Nin7g02507 1347 Gene3D - 401 494 IPR036388 -
Nin7g02507 1347 Coils Coil 224 244 - -
Nin7g02507 1347 Gene3D Ribonuclease Inhibitor 530 863 IPR032675 -
Nin7g02507 1347 Pfam NB-ARC domain 166 403 IPR002182 GO:0043531(InterPro)
Nin7g02507 1347 SUPERFAMILY L domain-like 483 1314 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nin7g02507 K13457 disease resistance protein RPM1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nin Nin-Chr6:8130403 Nin7g02507 Nin-Chr7:41607141 dispersed
Nin Nin-Chr7:17205440 Nin7g02507 Nin-Chr7:41607141 dispersed
Nin Nin-Chr7:41607141 Nin7g02513 Nin-Chr7:41700673 dispersed
Nin Nin-Chr7:41607141 Nin7g02509 Nin-Chr7:41629491 proximal