AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nin7g02526 ATGGAGATGAAGAATGAATCAGCGGTGAAAAGGCCGAAAACGAAGATCGTCTGCACTCTCGGACCTGCATCGAGGTCCGTTCCGATGGTGGAGAAGCTGTTGAGAGCCGGCATGAACGTTGCTCGGTTCAACTTCTCGCACGGATCGTACGAGTATCATCAGGAGACTCTCAATAACCTCCGCACTGCCATGGACAACACCGGTATTCTCTGCGCCGTCATGCTCGATACCAAAGGTCCAGAGATTCGAACAGGTTTTCTGAAAGATGGTAAGCCAGTCCAATTGAAGCAGGGTCAAGAGATCACCATCTCCACTGATTATGAGCTAAAGGGCGATAGTGAAATGATTTGTATGAGCTATAAGAAGTTGGCTTATGATGTAAAGCCTGGGATGGTGATTCTCTGTGCGGATGGTACCATATCATTCACAGTTCTGTCTACTGACACAGAAAAAGGCTTAGTTCGATGCCGATGCGAAAATACAGCACTTCTGGGTGAGAGGAAAAATGTTAACCTTCCTGGGGTGATAGTGGATCTCCCAACTTTGACAGCGAAAGACAAAGAAGATATCCTAAAATGGGGGGTGCCTAACAAAATTGACATGATCGCTCTTTCATTTGTCCGCAAGGGATCAGATTTGGTTGAAGTTCGTAAGTTGCTTGGAGTTCATGCAAAAACGATCCTTCTTATGTCAAAGGTTGAAAATCAAGAAGGTGTTGCCAACTTTGATGAAATCCTTGCCAACTCCGATGCCTTTATGGTGGCTCGTGGCGACCTGGGAATGGAAATCCCAATTGAAAAGATTTTTCTAGCACAGAAAGTTATGGTCTACAAATGCAACATACAGGGAAAGCCAGTGGTAACAGCAACTCAAATGTTGGAGTCCATGATCAAATCTCCAAGGCCAACTCGTGCAGAAGCCACAGACGTTGCAAATGCCGTTCTTGATGGCACTGACTGTGTAATGCTCAGTGGCGAAACAGCAGCCGGAGCTTATCCAGAACTCGCTGTTCGAACCATGGCCAAGATTTGCATGGAAGCAGAAAGCACGATCGACTATGCCGATGTTTTCAAGAGGATTACCGCAAATGCACCCGTACCCATGAGCCCACTTGAGAGTTTGGCTTCTTCTGCCGTTCGTACAGCAAATTCATCCAAAGCTGTGCTCATACTGGTCTTGACCCGAGGAGGAAGCACTGCGAAATTAGTTGCCAAATACAGGCCAGGCATGCCGATTCTCTCGGTCGTTGTCCCCGAGATCAAAACCGATTCCTTCGATTGGGAGTGCAGCGATGAATCTCCGGCTAGGCATAGCCTTATTTTCAGGGGCTTAGTCCCTGTTCTTTGCGCAGGTTCCGCCAAGGCCTCTCATGCCGAGTCGACCGAAGAAGCACTGGAATTCGCCTTGCAACATGCTAAAGGCAAAGGACTATGCAAGGAGGGCGATGCGGTTGTAGCTCTACACCGTGTTGGAACCGCATCGGTGATCAAGATTGTCACCGTGAAGTGA 1509 48.05 MEMKNESAVKRPKTKIVCTLGPASRSVPMVEKLLRAGMNVARFNFSHGSYEYHQETLNNLRTAMDNTGILCAVMLDTKGPEIRTGFLKDGKPVQLKQGQEITISTDYELKGDSEMICMSYKKLAYDVKPGMVILCADGTISFTVLSTDTEKGLVRCRCENTALLGERKNVNLPGVIVDLPTLTAKDKEDILKWGVPNKIDMIALSFVRKGSDLVEVRKLLGVHAKTILLMSKVENQEGVANFDEILANSDAFMVARGDLGMEIPIEKIFLAQKVMVYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPELAVRTMAKICMEAESTIDYADVFKRITANAPVPMSPLESLASSAVRTANSSKAVLILVLTRGGSTAKLVAKYRPGMPILSVVVPEIKTDSFDWECSDESPARHSLIFRGLVPVLCAGSAKASHAESTEEALEFALQHAKGKGLCKEGDAVVALHRVGTASVIKIVTVK 502
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nin7g02526 502 Pfam Pyruvate kinase, barrel domain 13 337 IPR015793 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Nin7g02526 502 Gene3D - 13 347 IPR040442 -
Nin7g02526 502 NCBIfam pyruvate kinase 13 491 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Nin7g02526 502 Pfam Pyruvate kinase, alpha-beta domain 372 497 IPR015795 -
Nin7g02526 502 Gene3D - 80 180 IPR015806 GO:0004743(InterPro)|GO:0006096(InterPro)
Nin7g02526 502 CDD Pyruvate-Kinase 12 501 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Nin7g02526 502 FunFam Pyruvate kinase 155 347 - -
Nin7g02526 502 ProSitePatterns Pyruvate kinase active site signature. 227 239 IPR018209 GO:0004743(InterPro)|GO:0006096(InterPro)
Nin7g02526 502 PANTHER PYRUVATE KINASE 8 498 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0004743(PANTHER)|GO:0005737(PANTHER)|GO:0006096(InterPro)|GO:0006096(PANTHER)|GO:0030955(InterPro)
Nin7g02526 502 Gene3D - 348 489 IPR036918 -
Nin7g02526 502 FunFam Pyruvate kinase 80 180 - -
Nin7g02526 502 SUPERFAMILY PK beta-barrel domain-like 80 179 IPR011037 -
Nin7g02526 502 FunFam Pyruvate kinase 348 489 - -
Nin7g02526 502 SUPERFAMILY PK C-terminal domain-like 336 501 IPR036918 -
Nin7g02526 502 PRINTS Pyruvate kinase family signature 281 305 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Nin7g02526 502 PRINTS Pyruvate kinase family signature 325 341 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Nin7g02526 502 PRINTS Pyruvate kinase family signature 69 85 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Nin7g02526 502 PRINTS Pyruvate kinase family signature 199 213 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Nin7g02526 502 PRINTS Pyruvate kinase family signature 229 255 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Nin7g02526 502 PRINTS Pyruvate kinase family signature 256 280 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Nin7g02526 502 PRINTS Pyruvate kinase family signature 306 324 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Nin7g02526 502 SUPERFAMILY Phosphoenolpyruvate-pyruvate domain 8 356 IPR015813 GO:0003824(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nin7g02526 K00873 pyruvate kinase [EC:2.7.1.40]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nin Nin-Chr2:32985677 Nin7g02526 Nin-Chr7:41834750 dispersed
Nin Nin-Chr3:49942751 Nin7g02526 Nin-Chr7:41834750 dispersed
Nin Nin-Chr5:2181425 Nin7g02526 Nin-Chr7:41834750 dispersed
Nin Nin-Chr7:41834750 Nin9g00728 Nin-Chr9:9444430 dispersed
Nin Nin-Chr7:41834750 Nin2g02040 Nin-Chr2:32963392 transposed