AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Nin9g02242 | ATGATGCATGAACCGGTATACGGGGAAGCTTTTCCGGCGACTAGTTCCGGCGATCATCCTTTCTTTCGCCGGAGCACGAGCTTCAGCAGTCTAATCCCCTGTTTAACGGAGAAATGGGGCGACTTGCCGTTAAGGGTGGATGACTCGGAAGATATGGTGATTTACGGCATCTTGCGTGACGCCGTCAGTGTTGGATGGACGCCGTTTAACTTCACGGCCAAGGACGTTAAAGCTGAGGTCAGGGAAGAGATTGAGCCAGCTATGCCAGTTCAGCTACTCGAAGTGGCTATTACGCCGCCGATGACTGTGGACCATGTGGCGTCGGCTTCGGCTTCGCCGCCGCCGCCCGTGTCCAGAGGGAGGCACTACAGGGGAGTGAGGCAGCGGCCGTGGGGGAAGTTTGCGGCTGAAATTAGAGACCCGGCTAAAAACGGCGCCAGAGTTTGGCTCGGGACTTACGAGACCGCGGAGGAGGCAGCCATGGCTTATGACCGAGCCGCCTACAGGATGCGTGGAGCCAAAGCTCTATTAAATTTCCCGCACCGGATCGGCTTGAACGAGCCGGAGCCCGTTCGAATAACGGCCAAAAGGAGGTCCCCTGAGCCCTCAGCTTCATCCTCGTCAGCTTCAGAAAGCAGCTCGCCTAAGAGGAGGAATACTACAAGTTCAGTCCCAACGTTGCTAGCCGAGCCGGAAGTACAAAGCCGATCAAATGGGCTTGAGCAAATAGATCGAATGCCAGCTGGCGAGCAATTATTGGTCGCTTAG | 768 | 56.12 | MMHEPVYGEAFPATSSGDHPFFRRSTSFSSLIPCLTEKWGDLPLRVDDSEDMVIYGILRDAVSVGWTPFNFTAKDVKAEVREEIEPAMPVQLLEVAITPPMTVDHVASASASPPPPVSRGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAAMAYDRAAYRMRGAKALLNFPHRIGLNEPEPVRITAKRRSPEPSASSSSASESSSPKRRNTTSSVPTLLAEPEVQSRSNGLEQIDRMPAGEQLLVA | 255 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Nin9g02242 | 255 | Gene3D | AP2-ERF domain | 121 | 182 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Nin9g02242 | 255 | PANTHER | DNA-BINDING DOMAIN | 103 | 219 | IPR044808 | GO:0003700(InterPro)|GO:0009873(InterPro) | |
| Nin9g02242 | 255 | MobiDBLite | consensus disorder prediction | 188 | 255 | - | - | |
| Nin9g02242 | 255 | SUPERFAMILY | DNA-binding domain | 122 | 182 | IPR016177 | GO:0003677(InterPro) | |
| Nin9g02242 | 255 | MobiDBLite | consensus disorder prediction | 199 | 241 | - | - | |
| Nin9g02242 | 255 | Pfam | AP2 domain | 122 | 172 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Nin9g02242 | 255 | ProSiteProfiles | AP2-ERF domain profile. | 122 | 180 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Nin9g02242 | 255 | SMART | rav1-2 | 122 | 186 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Nin9g02242 | 255 | PRINTS | Ethylene responsive element binding protein signature | 146 | 162 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Nin9g02242 | 255 | PRINTS | Ethylene responsive element binding protein signature | 123 | 134 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Nin9g02242 | 255 | CDD | AP2 | 122 | 181 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Nin9g02242 | 255 | FunFam | Ethylene-responsive transcription factor 2 | 121 | 181 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Nin9g02242 | K09286 | EREBP-like factor |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Nin | Nin-Chr1:40217589 | Nin9g02242 | Nin-Chr9:34194426 | dispersed | |
| Nin | Nin-Chr6:12877949 | Nin9g02242 | Nin-Chr9:34194426 | dispersed | |
| Nin | Nin-Chr6:13334120 | Nin9g02242 | Nin-Chr9:34194426 | dispersed | |
| Nin | Nin-Chr6:13437140 | Nin9g02242 | Nin-Chr9:34194426 | dispersed | |
| Nin | Nin-Chr6:33514619 | Nin9g02242 | Nin-Chr9:34194426 | dispersed | |
| Nin | Nin-Chr6:38113182 | Nin9g02242 | Nin-Chr9:34194426 | dispersed | |
| Nin | Nin-Chr9:12188848 | Nin9g02242 | Nin-Chr9:34194426 | dispersed | |
| Nin | Nin-Chr9:34194426 | Nin9g02669 | Nin-Chr9:38178308 | dispersed | |
| Nin | Nin-Chr9:34194426 | Nin9g02245 | Nin-Chr9:34227082 | proximal |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Nin1g00034 | . | 36 | 166 | CBF gene family | AT5G13330 | 48.428 | 2.39e-39 | 137.0 | |
| Nin1g00826 | . | 39 | 107 | CBF gene family | AT2G47520 | 57.971 | 3.17e-19 | 79.3 | |
| Nin1g00838 | . | 19 | 95 | CBF gene family | AT5G19790 | 74.684 | 2.58e-32 | 121.0 | |
| Nin1g01817 | . | 39 | 107 | CBF gene family | AT2G47520 | 59.42 | 1.85e-20 | 83.2 | |
| Nin1g02073 | . | 18 | 269 | CBF gene family | AT4G28140 | 43.051 | 2.31e-65 | 209.0 | |
| Nin1g02197 | . | 13 | 86 | CBF gene family | AT5G44210 | 70.27 | 3.82e-29 | 105.0 | |
| Nin1g02198 | . | 21 | 131 | CBF gene family | AT3G15210 | 63.964 | 4.62e-38 | 132.0 | |
| Nin1g02199 | . | 21 | 131 | CBF gene family | AT3G15210 | 63.964 | 4.62e-38 | 132.0 | |
| Nin1g02716 | . | 1 | 309 | CBF gene family | AT1G13260 | 68.224 | 4.49e-142 | 405.0 | |
| Nin1g02785 | . | 22 | 227 | CBF gene family | AT1G68550 | 35.238 | 4.16e-23 | 97.1 | |
| Nin2g00090 | . | 21 | 179 | CBF gene family | AT5G61890 | 55.0 | 2.46e-54 | 174.0 | |
| Nin2g00956 | . | 21 | 149 | CBF gene family | AT3G50260 | 60.584 | 2.40e-49 | 155.0 | |
| Nin2g01450 | . | 1 | 332 | CBF gene family | AT1G78080 | 48.725 | 6.74e-76 | 234.0 | |
| Nin2g01514 | . | 14 | 101 | CBF gene family | AT1G22810 | 66.292 | 7.99e-38 | 125.0 | |
| Nin2g01719 | . | 50 | 229 | CBF gene family | AT1G21910 | 45.249 | 1.11e-44 | 148.0 | |
| Nin2g02053 | . | 39 | 107 | CBF gene family | AT2G47520 | 57.971 | 3.01e-19 | 79.3 | |
| Nin2g02295 | . | 12 | 133 | CBF gene family | AT2G33710 | 51.515 | 2.40e-37 | 132.0 | |
| Nin2g02396 | . | 1 | 199 | CBF gene family | AT1G15360 | 61.29 | 2.20e-77 | 229.0 | |
| Nin2g02506 | . | 29 | 91 | CBF gene family | AT5G13910 | 59.375 | 2.12e-19 | 78.6 | |
| Nin2g02518 | . | 1 | 176 | CBF gene family | AT5G25190 | 60.795 | 4.91e-66 | 198.0 | |
| Nin2g02568 | . | 11 | 303 | CBF gene family | AT1G16060 | 59.062 | 3.58e-104 | 307.0 | |
| Nin2g02817 | . | 22 | 236 | CBF gene family | AT5G11590 | 50.0 | 7.07e-59 | 184.0 | |
| Nin2g03089 | . | 1 | 414 | CBF gene family | AT1G72570 | 50.52 | 6.31e-137 | 402.0 | |
| Nin2g03149 | . | 1 | 358 | CBF gene family | AT1G53910 | 45.185 | 3.38e-77 | 240.0 | |
| Nin3g00237 | . | 1 | 217 | CBF gene family | AT3G23240 | 53.036 | 1.08e-69 | 212.0 | |
| Nin3g00238 | . | 16 | 135 | CBF gene family | AT3G23230 | 48.322 | 3.56e-40 | 131.0 | |
| Nin3g00240 | . | 14 | 133 | CBF gene family | AT3G23230 | 62.602 | 3.05e-44 | 141.0 | |
| Nin3g00303 | . | 29 | 88 | CBF gene family | AT5G44210 | 81.667 | 4.92e-29 | 104.0 | |
| Nin3g00744 | . | 1 | 136 | CBF gene family | AT3G16770 | 52.206 | 2.35e-39 | 138.0 | |
| Nin3g01223 | . | 126 | 192 | CBF gene family | AT1G80580 | 43.284 | 1.52e-07 | 44.7 | |
| Nin3g01225 | . | 26 | 243 | CBF gene family | AT2G31230 | 41.15 | 9.16e-40 | 135.0 | |
| Nin3g01363 | . | 26 | 569 | CBF gene family | AT5G10510 | 54.561 | 5.79e-166 | 481.0 | |
| Nin3g01523 | . | 2 | 266 | CBF gene family | AT4G39780 | 43.344 | 2.51e-68 | 212.0 | |
| Nin3g01677 | . | 35 | 99 | CBF gene family | AT5G44210 | 49.296 | 4.77e-12 | 58.5 | |
| Nin3g02076 | . | 36 | 335 | CBF gene family | AT1G16060 | 52.395 | 3.23e-84 | 257.0 | |
| Nin3g02150 | . | 26 | 334 | CBF gene family | AT1G50680 | 48.936 | 8.88e-91 | 274.0 | |
| Nin3g02636 | . | 47 | 233 | CBF gene family | AT5G11590 | 58.333 | 2.19e-62 | 195.0 | |
| Nin3g02934 | . | 19 | 138 | CBF gene family | AT3G23230 | 56.667 | 1.74e-42 | 135.0 | |
| Nin3g03092 | . | 84 | 170 | CBF gene family | AT4G23750 | 56.322 | 3.10e-23 | 98.6 | |
| Nin3g03257 | . | 9 | 129 | CBF gene family | AT2G40340 | 52.985 | 2.20e-39 | 140.0 | |
| Nin4g00009 | . | 18 | 79 | CBF gene family | AT5G13910 | 85.484 | 1.09e-34 | 124.0 | |
| Nin4g00592 | . | 50 | 234 | CBF gene family | AT3G54320 | 76.757 | 4.18e-92 | 282.0 | |
| Nin4g00676 | . | 19 | 77 | CBF gene family | AT5G19790 | 86.441 | 3.36e-31 | 117.0 | |
| Nin4g01081 | . | 23 | 144 | CBF gene family | AT4G34410 | 35.246 | 1.72e-09 | 52.0 | |
| Nin4g01082 | . | 23 | 196 | CBF gene family | AT4G34410 | 47.701 | 7.73e-32 | 114.0 | |
| Nin4g01141 | . | 1 | 315 | CBF gene family | AT4G36920 | 67.139 | 1.76e-130 | 385.0 | |
| Nin4g01154 | . | 4 | 114 | CBF gene family | AT5G67190 | 69.828 | 1.79e-50 | 158.0 | |
| Nin4g01301 | . | 2 | 99 | CBF gene family | AT4G39780 | 32.867 | 3.79e-10 | 55.8 | |
| Nin4g01442 | . | 1 | 467 | CBF gene family | AT4G37750 | 53.497 | 2.08e-157 | 462.0 | |
| Nin4g01878 | . | 9 | 182 | CBF gene family | AT1G71450 | 50.0 | 1.38e-52 | 164.0 | |
| Nin4g02117 | . | 36 | 377 | CBF gene family | AT3G54320 | 55.714 | 8.86e-111 | 332.0 | |
| Nin4g02329 | . | 11 | 185 | CBF gene family | AT1G19210 | 52.736 | 1.61e-57 | 178.0 | |
| Nin4g02330 | . | 20 | 103 | CBF gene family | AT1G74930 | 45.349 | 1.72e-13 | 65.9 | |
| Nin5g00060 | . | 123 | 291 | CBF gene family | AT5G47230 | 49.425 | 4.11e-43 | 149.0 | |
| Nin5g00061 | . | 1 | 207 | CBF gene family | AT4G17490 | 45.972 | 8.25e-46 | 152.0 | |
| Nin5g00062 | . | 1 | 66 | CBF gene family | AT4G17490 | 42.647 | 1.47e-07 | 46.2 | |
| Nin5g00065 | . | 147 | 291 | CBF gene family | AT5G47230 | 54.054 | 8.38e-42 | 139.0 | |
| Nin5g00067 | . | 1 | 282 | CBF gene family | AT4G17490 | 42.759 | 3.22e-54 | 174.0 | |
| Nin5g00068 | . | 1 | 293 | CBF gene family | AT5G47230 | 35.738 | 3.16e-41 | 143.0 | |
| Nin5g00069 | . | 1 | 294 | CBF gene family | AT5G47230 | 35.39 | 9.94e-44 | 148.0 | |
| Nin5g00070 | . | 50 | 238 | CBF gene family | AT4G17500 | 62.371 | 1.36e-70 | 214.0 | |
| Nin5g00071 | . | 50 | 238 | CBF gene family | AT4G17500 | 62.371 | 1.36e-70 | 214.0 | |
| Nin5g00324 | . | 55 | 234 | CBF gene family | AT3G54320 | 76.667 | 1.54e-91 | 282.0 | |
| Nin5g00331 | . | 15 | 81 | CBF gene family | AT3G20310 | 49.275 | 1.04e-12 | 60.1 | |
| Nin5g00870 | . | 19 | 230 | CBF gene family | AT5G11590 | 61.574 | 1.94e-66 | 204.0 | |
| Nin5g00897 | . | 13 | 343 | CBF gene family | AT4G23750 | 43.38 | 8.00e-63 | 201.0 | |
| Nin5g00937 | . | 29 | 216 | CBF gene family | AT4G25470 | 58.416 | 6.23e-72 | 216.0 | |
| Nin5g01261 | . | 59 | 231 | CBF gene family | AT5G52020 | 52.809 | 1.29e-44 | 149.0 | |
| Nin5g01267 | . | 32 | 222 | CBF gene family | AT5G51990 | 56.863 | 2.41e-71 | 216.0 | |
| Nin5g01268 | . | 32 | 222 | CBF gene family | AT5G51990 | 57.353 | 4.09e-73 | 220.0 | |
| Nin5g02023 | . | 1 | 94 | CBF gene family | AT5G25190 | 93.617 | 2.40e-63 | 190.0 | |
| Nin5g02122 | . | 1 | 199 | CBF gene family | AT1G15360 | 57.005 | 2.40e-72 | 216.0 | |
| Nin5g02184 | . | 8 | 77 | CBF gene family | AT5G19790 | 61.429 | 1.43e-23 | 96.7 | |
| Nin5g02414 | . | 1 | 335 | CBF gene family | AT1G64380 | 45.058 | 2.79e-70 | 218.0 | |
| Nin6g00175 | . | 39 | 276 | CBF gene family | AT4G27950 | 41.129 | 7.21e-45 | 153.0 | |
| Nin6g00500 | . | 21 | 78 | CBF gene family | AT5G19790 | 74.138 | 3.39e-25 | 102.0 | |
| Nin6g01001 | . | 87 | 298 | CBF gene family | AT2G44940 | 56.682 | 5.30e-67 | 209.0 | |
| Nin6g01027 | . | 79 | 187 | CBF gene family | AT2G44840 | 59.649 | 6.47e-40 | 136.0 | |
| Nin6g01055 | . | 91 | 168 | CBF gene family | AT2G44840 | 68.354 | 8.57e-33 | 120.0 | |
| Nin6g01056 | . | 40 | 156 | CBF gene family | AT2G44840 | 54.167 | 6.85e-33 | 117.0 | |
| Nin6g01879 | . | 13 | 176 | CBF gene family | AT4G18450 | 45.0 | 1.98e-36 | 129.0 | |
| Nin6g01882 | . | 48 | 185 | CBF gene family | AT5G47220 | 51.799 | 3.33e-39 | 132.0 | |
| Nin6g01956 | . | 22 | 131 | CBF gene family | AT3G15210 | 61.607 | 2.43e-40 | 136.0 | |
| Nin6g01957 | . | 8 | 189 | CBF gene family | AT1G28360 | 46.316 | 1.90e-42 | 137.0 | |
| Nin6g02216 | . | 50 | 238 | CBF gene family | AT4G17500 | 58.163 | 5.42e-58 | 187.0 | |
| Nin7g00604 | . | 18 | 96 | CBF gene family | AT5G19790 | 79.747 | 1.33e-39 | 137.0 | |
| Nin7g01802 | . | 43 | 418 | CBF gene family | AT4G36920 | 50.478 | 5.43e-100 | 305.0 | |
| Nin7g01973 | . | 1 | 319 | CBF gene family | AT1G51190 | 72.586 | 3.29e-159 | 455.0 | |
| Nin7g02230 | . | 108 | 382 | CBF gene family | AT4G13620 | 47.115 | 6.75e-77 | 239.0 | |
| Nin7g02627 | . | 21 | 252 | CBF gene family | AT5G19790 | 43.58 | 9.41e-54 | 175.0 | |
| Nin8g00022 | . | 14 | 198 | CBF gene family | AT4G34410 | 45.408 | 2.03e-39 | 137.0 | |
| Nin8g00042 | . | 14 | 198 | CBF gene family | AT4G34410 | 45.408 | 2.03e-39 | 137.0 | |
| Nin8g00700 | . | 21 | 154 | CBF gene family | AT3G15210 | 55.245 | 1.01e-41 | 141.0 | |
| Nin8g00703 | . | 21 | 154 | CBF gene family | AT3G15210 | 55.245 | 2.35e-42 | 142.0 | |
| Nin8g01251 | . | 1 | 225 | CBF gene family | AT1G50640 | 57.741 | 8.96e-60 | 186.0 | |
| Nin8g01252 | . | 1 | 225 | CBF gene family | AT1G50640 | 57.741 | 8.96e-60 | 186.0 | |
| Nin8g01837 | . | 12 | 282 | CBF gene family | AT4G27950 | 37.091 | 1.06e-40 | 140.0 | |
| Nin8g02239 | . | 33 | 422 | CBF gene family | AT2G41710 | 65.423 | 5.85e-167 | 474.0 | |
| Nin8g02681 | . | 13 | 205 | CBF gene family | AT1G50640 | 49.746 | 2.19e-40 | 136.0 | |
| Nin9g00370 | . | 113 | 314 | CBF gene family | AT4G36920 | 80.198 | 3.22e-96 | 296.0 | |
| Nin9g00427 | . | 3 | 240 | CBF gene family | AT3G57600 | 54.286 | 5.04e-82 | 246.0 | |
| Nin9g00831 | . | 1 | 209 | CBF gene family | AT3G23240 | 54.338 | 1.63e-70 | 217.0 | |
| Nin9g00832 | . | 36 | 218 | CBF gene family | AT3G23240 | 54.315 | 8.48e-63 | 193.0 | |
| Nin9g01050 | . | 4 | 398 | CBF gene family | AT5G17430 | 50.746 | 2.20e-132 | 395.0 | |
| Nin9g01199 | . | 26 | 223 | CBF gene family | AT4G27950 | 35.577 | 3.13e-22 | 94.7 | |
| Nin9g01246 | . | 144 | 231 | CBF gene family | AT5G47230 | 57.303 | 1.01e-23 | 93.6 | |
| Nin9g02011 | . | 8 | 317 | CBF gene family | AT2G40340 | 35.777 | 7.37e-51 | 171.0 | |
| Nin9g02012 | . | 7 | 89 | CBF gene family | AT5G18450 | 66.265 | 6.66e-30 | 119.0 | |
| Nin9g02242 | . | 43 | 242 | CBF gene family | AT4G17500 | 50.237 | 1.94e-64 | 200.0 | |
| Nin9g02245 | . | 59 | 221 | CBF gene family | AT5G51190 | 53.757 | 2.39e-57 | 178.0 | |
| Nin9g02434 | . | 2 | 216 | CBF gene family | AT4G25470 | 55.947 | 9.71e-75 | 224.0 | |
| Nin9g02435 | . | 32 | 222 | CBF gene family | AT5G51990 | 55.385 | 4.77e-69 | 209.0 | |
| Nin9g02436 | . | 7 | 222 | CBF gene family | AT5G51990 | 51.598 | 1.19e-68 | 208.0 | |
| Nin9g02437 | . | 59 | 231 | CBF gene family | AT5G52020 | 55.747 | 3.44e-43 | 142.0 | |
| Nin9g02669 | . | 3 | 241 | CBF gene family | AT4G27950 | 48.81 | 8.63e-59 | 193.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Nin | AP2 | 4.3e-15 | CL0081 | TF | AP2/ERF-ERF |