AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nin9g02247 ATGGAATTTACAGAAGCTTATAAGCAGACGGGTCCTTGTTGTTTCTCCCCAAATGCTCGGTTTCTAGCTGTCGCTGTGGATTATCGCCTCGTGATTCGTGACGTTCGGTCGCTCAAGGTAGTGCAACTGTTTTCATGCGTGGATAAAATAAGCTATATCGAATGGGCCCTTGATTCTGAATACATACTTTGTGGTCTCTACAAGAAGCCCATGATACAGGCGTGGTCACTAACCCAACCTGAATGGACATGCAAAATAGATGAAGGTCCTGCAGGTATTGCATATGCTAGATGGAGCCCTGACAGTCGCCACATACTCACTACATCTGAGTTCCAGTTGCGGTTGACTGTTTGGTCACTATTAAATACAGCATGCGTACATGTCCAATGGCCAAAGCATGATACATTAGACTTGGCTGATATTGAATGGTCACCGGATGATAGTGCAATTGTGATATGGGATTCTTCTCTCGAATATAAGGTTTTGGTATATTCCTTAGATGGGCGGTGCCTATCTAAGTTTCAAGCATATGAAAGTGGATTGGGTGTAAAGACCGTTTCTTGGTCCCCAAATGGGCAGTTTTTAGCAGTTGGCAGTTATGACCAGATGTTACGGGTTCTGAATCACTTGACTTGGAAAGTATTTGCGGAATTTTCGCATCTGTCTACTGTAAGAGCTCCTTGTTGTGCTGCTGTTTTCAAGGAGGTTGATGAGCCATTGCAGCTAGATATGTCTGACCTCTCTCTAAGTGATGATTTTACCCAAAGCAATCCTGAAAATGCTCCAGAAGGATTCGTGGAAGTTAGATACGACATTATGGAACTACCAATCAGCTTGCCTTTCCAAAAGCCTCCCCTGGATAAGCCGAACCCTAAGCAAGGAATCAGCCTCATGTCATGGAGCAAAGACAGTCGTTATATTTGTACTCGCAACGACAGCATGCCTACTGTTCTATGGATATGGGACATGAACCTCCTTGAACTCGCAGCCATTTTGGTACAGAAGGACGCCATACGAGCAGCGGCATGGGATCCGACTTGCACACGGCTCGTCTTGTGCACCGGAAGCTCGTACTTGTATATGTGGACACCTTCCGGCGCTTATTGCGTTAGTATCCCACTACCTCAGTTTTCAGCAGTAGACCTGAAATGGGATTCGGATGGAAGCTGTCTTCTTGTTAAGGACAAGGAGTTATTTTGTTGTGCTGCTGTTCCTGTACTGCCAGACACTAGCGACTATAGCTCAGATGATTGA 1254 45.37 MEFTEAYKQTGPCCFSPNARFLAVAVDYRLVIRDVRSLKVVQLFSCVDKISYIEWALDSEYILCGLYKKPMIQAWSLTQPEWTCKIDEGPAGIAYARWSPDSRHILTTSEFQLRLTVWSLLNTACVHVQWPKHDTLDLADIEWSPDDSAIVIWDSSLEYKVLVYSLDGRCLSKFQAYESGLGVKTVSWSPNGQFLAVGSYDQMLRVLNHLTWKVFAEFSHLSTVRAPCCAAVFKEVDEPLQLDMSDLSLSDDFTQSNPENAPEGFVEVRYDIMELPISLPFQKPPLDKPNPKQGISLMSWSKDSRYICTRNDSMPTVLWIWDMNLLELAAILVQKDAIRAAAWDPTCTRLVLCTGSSYLYMWTPSGAYCVSIPLPQFSAVDLKWDSDGSCLLVKDKELFCCAAVPVLPDTSDYSSDD 417
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nin9g02247 417 SUPERFAMILY Tricorn protease domain 2 13 394 - -
Nin9g02247 417 Pfam WD domain, G-beta repeat 168 206 IPR001680 GO:0005515(InterPro)
Nin9g02247 417 Gene3D - 8 130 IPR015943 GO:0005515(InterPro)
Nin9g02247 417 Gene3D - 283 402 IPR015943 GO:0005515(InterPro)
Nin9g02247 417 PANTHER WD REPEAT PROTEIN 8-RELATED 134 405 IPR052778 GO:0005815(PANTHER)|GO:0072686(PANTHER)|GO:1990810(PANTHER)|GO:1990811(PANTHER)
Nin9g02247 417 SMART WD40-4 325 363 IPR001680 GO:0005515(InterPro)
Nin9g02247 417 SMART WD40-4 77 119 IPR001680 GO:0005515(InterPro)
Nin9g02247 417 SMART WD40-4 167 208 IPR001680 GO:0005515(InterPro)
Nin9g02247 417 Gene3D - 131 232 IPR015943 GO:0005515(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nin9g02247 K25164 WD repeat-containing protein WRAP73