AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Nin9g02278 | ATGGCTCCTTCACATTTCTTCCTCTCAGTTTTGCTACATTTGTTCTGCTTCTTTACAATGTGCTTTGGCATAAGACCCATTCACTATAACTTGTCCACCGTCGCTACCCACTGGTCATCAGCGATTGCTACGTGGTACGGCGCGCCCGATGGCGCCGGAAGTGATGGAGGGTCATGTGGGTATGGTAATACAGTTTCACAAGCACCATTCTCTTCGATGGTGACCGGGATCGGTCCAGCTCTTTACAAATCGGGCAGGGAATGTGGAGCTTGTTACATGGTGAAATGTACGACGCATCCCTCGTGTTCAGGCAAGTCTGCTAGAGTGGTCATAACCGATTTTTGCCCTGGAGGACCGTGTGCATCCGACCACGCACATTTTGATCTGAGCGGAACCGCCATGGGTGCCATGGCGAAGCCCGGTCAAGGAGAAAGATTACGTGATGCTGGAATTCTTCAAATTCGCTTTGCACGCGTAAAATGTGTTTATGCGGGAAAGACCGTTGCATTTCACGTTGACCTTGGTTCAAACCCTAACTACTTCGCGGCGGTGATTGAGTTTGAAGATGGAGACGGTGATCTTGCCGGAGTAGAACTAAGGGAGGGGGCAACAAGTGGATCAAAGGGGTGGTGGAAAATGCAACAATCTTGGGGTGCTGTTTGGAAACTCGACGCCGGCAGGGAGCTACATCCGCCATTTTCGATCCGATTGATATCGCAATATTCGGAGCAAATCCTAGTGGCAAAAAATGTAATTCCAAGTGGATGGACGCCTGTTTCAGTATCAAACTCCGGCGAGCAAATGGTGAAAGCAATTAGGGTTTATCAGCTTGGTGGCCCTGAGGTGTTGAAGTGGGAGGATGTGGAAGTAGGAGAGCCCAAAGAAGGTGAAATCAGAGTGAAGAATAAAGCCATCGGTGTTAATTTCATCGATGTGTACTTCCGGACAGGAGTTTACGCAGTGCCGGAACTGCCATTTATCCCAGGTGTGGAGGCTGTTGGTGTAGTCACTGCTGTGGGTTCTGGAGTAACTGATAGGAAAGTTGGAGAACTTGTTTTCCATCCCGGAAGTGCAAAATGTGGCACATACATAGAAGAGCAGATTGTTGCTGCTGACAGAGCAATGCCTGTTCCAGGGATGGATCCTCTCCTAGTAGCATCTGTCTTGACCAAGGGACTGACTGCACATTACCTTGTCCGTACTTGCTTCAAGGTAGAATACATATTCTGGTCAGATCCTACTTCCTCTTTCAATTATCATGTTCTTCTTTTTCTTGTCGTTCCCTTTTTGGAACATGTATGCATTTGCATTGTGTAA | 1317 | 48.06 | MAPSHFFLSVLLHLFCFFTMCFGIRPIHYNLSTVATHWSSAIATWYGAPDGAGSDGGSCGYGNTVSQAPFSSMVTGIGPALYKSGRECGACYMVKCTTHPSCSGKSARVVITDFCPGGPCASDHAHFDLSGTAMGAMAKPGQGERLRDAGILQIRFARVKCVYAGKTVAFHVDLGSNPNYFAAVIEFEDGDGDLAGVELREGATSGSKGWWKMQQSWGAVWKLDAGRELHPPFSIRLISQYSEQILVAKNVIPSGWTPVSVSNSGEQMVKAIRVYQLGGPEVLKWEDVEVGEPKEGEIRVKNKAIGVNFIDVYFRTGVYAVPELPFIPGVEAVGVVTAVGSGVTDRKVGELVFHPGSAKCGTYIEEQIVAADRAMPVPGMDPLLVASVLTKGLTAHYLVRTCFKVEYIFWSDPTSSFNYHVLLFLVVPFLEHVCICIV | 438 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Nin9g02278 | 438 | SMART | dpbb-1 | 74 | 156 | IPR007112 | - | |
| Nin9g02278 | 438 | PANTHER | EXPANSIN-B3 | 16 | 268 | - | - | |
| Nin9g02278 | 438 | Pfam | Expansin C-terminal domain | 168 | 253 | IPR007117 | - | |
| Nin9g02278 | 438 | Gene3D | - | 278 | 390 | - | - | |
| Nin9g02278 | 438 | Gene3D | - | 24 | 161 | IPR036908 | - | |
| Nin9g02278 | 438 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 179 | 264 | IPR007117 | - | |
| Nin9g02278 | 438 | Gene3D | - | 391 | 405 | - | - | |
| Nin9g02278 | 438 | PRINTS | Major pollen allergen Lol pI signature | 96 | 106 | IPR005795 | GO:0005576(InterPro)|GO:0019953(InterPro) | |
| Nin9g02278 | 438 | PRINTS | Major pollen allergen Lol pI signature | 170 | 185 | IPR005795 | GO:0005576(InterPro)|GO:0019953(InterPro) | |
| Nin9g02278 | 438 | PRINTS | Major pollen allergen Lol pI signature | 219 | 236 | IPR005795 | GO:0005576(InterPro)|GO:0019953(InterPro) | |
| Nin9g02278 | 438 | PRINTS | Major pollen allergen Lol pI signature | 186 | 201 | IPR005795 | GO:0005576(InterPro)|GO:0019953(InterPro) | |
| Nin9g02278 | 438 | SMART | PKS-ER-names-mod | 278 | 438 | IPR020843 | GO:0016491(InterPro) | |
| Nin9g02278 | 438 | SUPERFAMILY | Barwin-like endoglucanases | 31 | 165 | IPR036908 | - | |
| Nin9g02278 | 438 | CDD | DPBB-EXPB-N | 38 | 161 | - | - | |
| Nin9g02278 | 438 | PRINTS | Expansin-Lol pI family signature | 210 | 224 | IPR007118 | GO:0005576(InterPro) | |
| Nin9g02278 | 438 | PRINTS | Expansin-Lol pI family signature | 55 | 73 | IPR007118 | GO:0005576(InterPro) | |
| Nin9g02278 | 438 | PRINTS | Expansin-Lol pI family signature | 149 | 165 | IPR007118 | GO:0005576(InterPro) | |
| Nin9g02278 | 438 | PRINTS | Expansin-Lol pI family signature | 250 | 264 | IPR007118 | GO:0005576(InterPro) | |
| Nin9g02278 | 438 | PRINTS | Expansin-Lol pI family signature | 37 | 52 | IPR007118 | GO:0005576(InterPro) | |
| Nin9g02278 | 438 | PRINTS | Expansin-Lol pI family signature | 78 | 96 | IPR007118 | GO:0005576(InterPro) | |
| Nin9g02278 | 438 | SUPERFAMILY | PHL pollen allergen | 166 | 258 | IPR036749 | - | |
| Nin9g02278 | 438 | Pfam | Alcohol dehydrogenase GroES-like domain | 295 | 367 | IPR013154 | - | |
| Nin9g02278 | 438 | Pfam | Lytic transglycolase | 79 | 152 | IPR009009 | - | |
| Nin9g02278 | 438 | Gene3D | - | 163 | 268 | IPR036749 | - | |
| Nin9g02278 | 438 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 56 | 166 | IPR007112 | - | |
| Nin9g02278 | 438 | SUPERFAMILY | GroES-like | 267 | 400 | IPR011032 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Nin9g02278 | K20628 | expansin |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Nin | Nin-Chr1:35887772 | Nin9g02278 | Nin-Chr9:34508093 | dispersed | |
| Nin | Nin-Chr6:11096162 | Nin9g02278 | Nin-Chr9:34508093 | dispersed | |
| Nin | Nin-Chr9:34508093 | Nin9g02279 | Nin-Chr9:34518396 | tandem |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Nin1g00792 | . | 7 | 250 | Expansin gene family | AT1G69530 | 85.656 | 5.07e-158 | 437.0 | |
| Nin1g01101 | . | 6 | 264 | Expansin gene family | AT3G45970 | 66.154 | 5.07e-118 | 337.0 | |
| Nin1g01992 | . | 6 | 260 | Expansin gene family | AT4G28250 | 71.595 | 4.62e-140 | 392.0 | |
| Nin3g01197 | . | 39 | 265 | Expansin gene family | AT3G03220 | 79.736 | 7.04e-142 | 397.0 | |
| Nin3g03415 | . | 11 | 253 | Expansin gene family | AT2G40610 | 77.642 | 1.09e-145 | 406.0 | |
| Nin4g00657 | . | 7 | 250 | Expansin gene family | AT1G69530 | 78.279 | 2.75e-139 | 389.0 | |
| Nin4g01508 | . | 170 | 206 | Expansin gene family | AT3G29030 | 64.865 | 7.75e-12 | 57.8 | |
| Nin5g00104 | . | 9 | 249 | Expansin gene family | AT4G17030 | 58.921 | 1.01e-103 | 299.0 | |
| Nin5g00161 | . | 3 | 247 | Expansin gene family | AT4G17030 | 42.105 | 5.03e-61 | 193.0 | |
| Nin5g01307 | . | 9 | 262 | Expansin gene family | AT1G12560 | 67.059 | 7.75e-128 | 362.0 | |
| Nin6g00937 | . | 8 | 257 | Expansin gene family | AT2G45110 | 53.175 | 7.07e-90 | 265.0 | |
| Nin6g00938 | . | 8 | 255 | Expansin gene family | AT2G45110 | 53.543 | 5.48e-91 | 268.0 | |
| Nin6g00939 | . | 52 | 273 | Expansin gene family | AT1G65680 | 51.121 | 3.47e-73 | 222.0 | |
| Nin6g00940 | . | 25 | 273 | Expansin gene family | AT1G65680 | 43.2 | 1.14e-64 | 201.0 | |
| Nin6g00941 | . | 25 | 273 | Expansin gene family | AT1G65680 | 43.2 | 1.14e-64 | 201.0 | |
| Nin6g00942 | . | 25 | 273 | Expansin gene family | AT1G65680 | 38.8 | 3.74e-54 | 174.0 | |
| Nin6g00943 | . | 25 | 273 | Expansin gene family | AT1G65680 | 44.0 | 3.17e-68 | 209.0 | |
| Nin6g00944 | . | 8 | 259 | Expansin gene family | AT2G45110 | 44.664 | 3.21e-71 | 217.0 | |
| Nin6g00945 | . | 60 | 273 | Expansin gene family | AT1G65680 | 68.203 | 7.95e-103 | 297.0 | |
| Nin6g01212 | . | 67 | 154 | Expansin gene family | AT3G29030 | 32.258 | 1.47e-08 | 49.7 | |
| Nin6g01215 | . | 3 | 154 | Expansin gene family | AT3G29030 | 29.299 | 1.70e-08 | 49.7 | |
| Nin6g02740 | . | 9 | 150 | Expansin gene family | AT5G56320 | 30.464 | 1.63e-07 | 47.0 | |
| Nin7g00567 | . | 1 | 249 | Expansin gene family | AT1G69530 | 78.486 | 5.79e-146 | 406.0 | |
| Nin7g01446 | . | 83 | 145 | Expansin gene family | AT1G65680 | 41.176 | 4.61e-07 | 45.4 | |
| Nin8g00779 | . | 9 | 246 | Expansin gene family | AT3G15370 | 64.228 | 1.02e-118 | 338.0 | |
| Nin8g01613 | . | 4 | 257 | Expansin gene family | AT2G39700 | 83.137 | 3.83e-163 | 450.0 | |
| Nin8g01857 | . | 14 | 253 | Expansin gene family | AT2G40610 | 77.5 | 2.51e-140 | 392.0 | |
| Nin9g01394 | . | 18 | 244 | Expansin gene family | AT1G20190 | 76.652 | 7.49e-132 | 379.0 | |
| Nin9g01655 | . | 8 | 257 | Expansin gene family | AT2G39700 | 84.8 | 2.21e-162 | 449.0 | |
| Nin9g01876 | . | 12 | 152 | Expansin gene family | AT5G56320 | 29.577 | 1.02e-09 | 52.8 | |
| Nin9g01877 | . | 40 | 165 | Expansin gene family | AT1G65680 | 32.836 | 3.43e-09 | 50.8 | |
| Nin9g01878 | . | 82 | 166 | Expansin gene family | AT1G65680 | 34.884 | 3.79e-09 | 51.2 | |
| Nin9g01879 | . | 68 | 153 | Expansin gene family | AT2G45110 | 37.931 | 7.79e-09 | 50.4 | |
| Nin9g02086 | . | 9 | 234 | Expansin gene family | AT2G40610 | 79.646 | 7.07e-132 | 370.0 | |
| Nin9g02138 | . | 9 | 253 | Expansin gene family | AT2G40610 | 79.592 | 4.37e-144 | 401.0 | |
| Nin9g02180 | . | 9 | 188 | Expansin gene family | AT2G40610 | 78.333 | 5.25e-104 | 297.0 | |
| Nin9g02278 | . | 26 | 269 | Expansin gene family | AT1G65680 | 51.2 | 7.55e-83 | 254.0 |