AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nin9g02289 ATGTCGAAGAATTCTTCCTCGGATGGAGGTGGAGATCACGCATCAAATCTTCCTCGTACCTTCAAATATTTACTAGCTACTCAGTTCTTGTCTCGAGGAATTCCCTTCGTTTTCAATTCCTGGATTGTAAGGCATCTAACGGAAGAAGATTATGCGCTGTATGCTGTGCAGTTTCATCTATTCGTCACCTGTGTCTTGTTCCTTAGTCGGGAGGGTTTCCGGAGAGCGTGCATGAGGGCAGATATTAGATGCGATGGTGCATCAACTGGAGGAAATGCAGAGAAGCTTTTAAAGATCGCCTGGTTGACTTTCCCCTTGGGGTTAATGATTACAGTTTGCGCATGTGTTTTCGTCTTTTGGTGGCAAGATTTAAGTTGGTCAAACTCATATGCACAAGCTATCTTGATTAATGGATTTGCGTGTATCTTAGAGTTATTGGCAGAACCCTTGTACATTCTCTCTCAGAATTTGCTTCTCCTCAAACTGCGGCTGATAGTTGAAACTGTGGCTACTCTTTTACGTTGTATTACAACCTATGTCCTCATTGTCAAAGAAACTAACTTGGAGAGAGCAATTGTTTTTGGGTTATCACAAACTGCATATGGAGCTTGCATTTTCTTGGGGTACTGGGTCTATTTTCTACTTTTGCATGGGTATAGGAGTTCCAATCTCTTTCCTTTCAGGTTTGGAAATAAGGTGGGTTTTGATAAGCAGCTGTCGAACATGTGCACAATATTTACCTTCCAATCTTTCCGAAAATTGATTCTTCAAGAAGGAGAAAAGATGGTTCTTGTATGGTTGGATACACCTTATAACCAAGCTGTATATGGTCTCATAGACAAATTAGGTAGCTTGGTGGTGAGGTTGGTCTTTCTTCCTTTCGAAGAAAGTTCGTACACAACCTTTGCAAGGTCTGCTTCAGGAGAAGATAAAGAGCGGAAAAGGAAATTAGGAACTTGTCTAACAGATGCTATGAAGCTTGTTCTGTTGATTGGATTGGTTTTTATGGCATTTGGCCCAAGCTATTCTTACTCTCTGATCAGACTATTATATGGTCGAAAATGGAGTGATGGAGAAGCTTCCACAGCCCTCCGGTATTACTGTTTATACATCGTTGTTCTGGCTATGAATGGAACATCTGAAGCGTTTTTGCATGCGGTCGCAACAGAGAACGAACTCAAGCGCTCAAATGATTCCTTGCTTTTATTTTCATTGATTTACGTGGTGCTAAATGTCGTACTGATTCGATCAGCTGGTGCACTTGGCCTAATTTTTGCAAATTCATTGAATATGATGTTTAGGATTATTTACTCGGCCGTGTTCATCAGGCGTTTCTTTAAGGTGTACCTTCTAAACATTCTTATTATTGATTATCTGCAGCTTAATTCTATAGCTTGGGTTTACATGTGGTATATGATTCTTTGTCAGGATTCGTCTTTGTTTGCCTTCCGCAAGTGTTTGCCTTCAGGTTGGATTGCTCTGTTGTTTTCGAGTGTAGTCACGCTCATTTCTGAGAAAATGTTTCTGGACCGTGAAAACTTCTGGCCGACATTTTCCATCCACTTTTCAGTTGGGTTTACATGCTTCTGCATTGCATCTTTTGTCATTTACCGCAACGAAAGATCTTTCATTAACAAAGTCATCCGCTTTCGTGAACATGCGGACTGA 1668 40.89 MSKNSSSDGGGDHASNLPRTFKYLLATQFLSRGIPFVFNSWIVRHLTEEDYALYAVQFHLFVTCVLFLSREGFRRACMRADIRCDGASTGGNAEKLLKIAWLTFPLGLMITVCACVFVFWWQDLSWSNSYAQAILINGFACILELLAEPLYILSQNLLLLKLRLIVETVATLLRCITTYVLIVKETNLERAIVFGLSQTAYGACIFLGYWVYFLLLHGYRSSNLFPFRFGNKVGFDKQLSNMCTIFTFQSFRKLILQEGEKMVLVWLDTPYNQAVYGLIDKLGSLVVRLVFLPFEESSYTTFARSASGEDKERKRKLGTCLTDAMKLVLLIGLVFMAFGPSYSYSLIRLLYGRKWSDGEASTALRYYCLYIVVLAMNGTSEAFLHAVATENELKRSNDSLLLFSLIYVVLNVVLIRSAGALGLIFANSLNMMFRIIYSAVFIRRFFKVYLLNILIIDYLQLNSIAWVYMWYMILCQDSSLFAFRKCLPSGWIALLFSSVVTLISEKMFLDRENFWPTFSIHFSVGFTCFCIASFVIYRNERSFINKVIRFREHAD 555
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nin9g02289 555 PANTHER ENDOPLASMIC RETICULUM MULTISPAN TRANSMEMBRANE PROTEIN-RELATED 14 552 IPR007594 GO:0005789(PANTHER)|GO:0006488(InterPro)|GO:0016020(InterPro)|GO:0034203(PANTHER)
Nin9g02289 555 Pfam Rft protein 21 548 IPR007594 GO:0006488(InterPro)|GO:0016020(InterPro)
Nin9g02289 555 CDD MATE-rft1 16 447 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nin9g02289 K06316 oligosaccharide translocation protein RFT1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nin Nin-Chr1:1905354 Nin9g02289 Nin-Chr9:34576545 dispersed