AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nin9g02301 ATGGCGTCTCTGAAATCTCGTCTGGAGCACTCCGTCACTCCCACCGCACTCCGATCCTATCTCGCAGAGTTTATCTCCACCTTCTTCTTCGTTTTCGCAGCCACCGGTTCTTCCATGGCTTCTCGTAAAATGACGCCTGATGCCGCAAATGATCCGTCTAGTCTGGTGGTCGCTGCGGTGGCAACCGCCTTTGCTCTATCCGTGGCGGTTTTTATAGCGTCAAATATTTCCGGTGGCCACGTGAACCCGGCGGTGACATTTGGAATGGCGGTTGGTGGACATATTAGTATTCCCATGGCGATTTGTTACTGGATTTGTCAAATGCTTGGCTCCGTCATGGCTTGTCTCCACTTGAAAATCACTACCGTCGGACAGCATGTGCCGATTCATGAAATCCCACAAGAGATGACGGGTTTTGGGGCATCTATTTTGGAAGGGGTGATGACATTTGTGCTGGTGTACACGGTATATGCAGCCGGAGACTCTAGGCGTGGTGCATTGGGGTGTATTGGACCACTGGCCATCGGGTTTATTGCCGGGGCCAATGTGTTGGCTTCGGGGCCCTTTACAGGCGGGTTTATGAACCCGGCGTATGCGTTTGGTTCAGCGGCAGTTGGTGGGAGTTTCAAGAACCAAGCGGCCTATTGGGTCGGGCCATTGATTGGTGCCGGAGTTGCAGGCCTCGTTTATGATAACGTTGTGTTCCCTGTACAACAAACCCGTGTTGATTCTCTCACAGGCATGGCTGAGCCTGTTGGCGTTTAA 765 52.55 MASLKSRLEHSVTPTALRSYLAEFISTFFFVFAATGSSMASRKMTPDAANDPSSLVVAAVATAFALSVAVFIASNISGGHVNPAVTFGMAVGGHISIPMAICYWICQMLGSVMACLHLKITTVGQHVPIHEIPQEMTGFGASILEGVMTFVLVYTVYAAGDSRRGALGCIGPLAIGFIAGANVLASGPFTGGFMNPAYAFGSAAVGGSFKNQAAYWVGPLIGAGVAGLVYDNVVFPVQQTRVDSLTGMAEPVGV 254
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nin9g02301 254 ProSitePatterns MIP family signature. 80 88 IPR022357 -
Nin9g02301 254 PRINTS Major intrinsic protein family signature 213 233 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Nin9g02301 254 PRINTS Major intrinsic protein family signature 144 162 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Nin9g02301 254 PRINTS Major intrinsic protein family signature 18 37 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Nin9g02301 254 PRINTS Major intrinsic protein family signature 99 118 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Nin9g02301 254 PRINTS Major intrinsic protein family signature 62 86 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Nin9g02301 254 PRINTS Major intrinsic protein family signature 176 198 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Nin9g02301 254 SUPERFAMILY Aquaporin-like 12 239 IPR023271 -
Nin9g02301 254 FunFam Probable aquaporin TIP5-1 2 242 - -
Nin9g02301 254 Gene3D Glycerol uptake facilitator protein. 3 244 IPR023271 -
Nin9g02301 254 Pfam Major intrinsic protein 13 230 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Nin9g02301 254 PANTHER AQUAPORIN-8 8 236 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nin9g02301 K09873 aquaporin TIP
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nin Nin-Chr9:34702523 Nin9g02302 Nin-Chr9:34705197 tandem
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Nin1g00748 . 114 196 Major Intrinsic Protein gene family AT1G31880 44.578 1.88e-15 77.4
Nin1g01216 . 1 280 Major Intrinsic Protein gene family AT4G35100 89.643 0.0 511.0
Nin1g01359 . 4 278 Major Intrinsic Protein gene family AT2G45960 30.795 3.54e-27 106.0
Nin1g01360 . 9 279 Major Intrinsic Protein gene family AT4G00430 29.066 2.28e-18 81.3
Nin2g02534 . 1 302 Major Intrinsic Protein gene family AT1G80760 75.166 1.35e-162 453.0
Nin2g02808 . 1 247 Major Intrinsic Protein gene family AT3G16240 83.065 5.62e-145 404.0
Nin2g03046 . 1 344 Major Intrinsic Protein gene family AT1G31880 47.815 8.33e-107 315.0
Nin3g01193 . 140 195 Major Intrinsic Protein gene family AT1G31880 46.429 3.66e-12 67.0
Nin4g00629 . 77 265 Major Intrinsic Protein gene family AT5G37820 56.316 1.03e-68 211.0
Nin4g00633 . 23 278 Major Intrinsic Protein gene family AT5G37820 47.761 1.55e-79 241.0
Nin4g02400 . 1 344 Major Intrinsic Protein gene family AT1G31880 44.02 1.90e-89 271.0
Nin5g00439 . 1 344 Major Intrinsic Protein gene family AT1G31880 62.133 5.35e-149 422.0
Nin5g01060 . 1 287 Major Intrinsic Protein gene family AT4G00430 90.625 0.0 530.0
Nin5g01670 . 1 247 Major Intrinsic Protein gene family AT5G47450 82.591 1.62e-145 405.0
Nin5g02381 . 1 245 Major Intrinsic Protein gene family AT2G25810 69.636 3.01e-109 313.0
Nin5g02637 . 29 280 Major Intrinsic Protein gene family AT4G10380 75.494 4.78e-130 371.0
Nin6g02785 . 285 343 Major Intrinsic Protein gene family AT1G31880 49.153 4.99e-13 70.1
Nin7g00182 . 1 283 Major Intrinsic Protein gene family AT3G54820 81.272 3.70e-173 478.0
Nin7g00297 . 4 251 Major Intrinsic Protein gene family AT2G36830 72.289 1.61e-123 350.0
Nin7g00298 . 3 248 Major Intrinsic Protein gene family AT2G36830 76.518 6.78e-131 368.0
Nin7g01258 . 29 203 Major Intrinsic Protein gene family AT1G31880 33.333 6.02e-17 82.0
Nin7g01606 . 1 249 Major Intrinsic Protein gene family AT2G36830 75.1 5.18e-134 376.0
Nin7g01750 . 1 202 Major Intrinsic Protein gene family AT3G53420 80.693 9.20e-117 332.0
Nin7g01752 . 1 283 Major Intrinsic Protein gene family AT3G53420 73.776 1.73e-154 431.0
Nin7g02809 . 50 280 Major Intrinsic Protein gene family AT4G18910 42.672 4.18e-52 179.0
Nin8g02382 . 1 214 Major Intrinsic Protein gene family AT3G56950 62.617 5.28e-96 280.0
Nin9g00053 . 13 262 Major Intrinsic Protein gene family AT3G06100 52.174 1.73e-85 256.0
Nin9g00316 . 1 252 Major Intrinsic Protein gene family AT4G01470 76.984 1.17e-139 390.0
Nin9g00560 . 1 285 Major Intrinsic Protein gene family AT3G54820 81.533 2.35e-173 478.0
Nin9g01078 . 7 267 Major Intrinsic Protein gene family AT1G17810 72.031 2.44e-125 355.0
Nin9g01891 . 1 286 Major Intrinsic Protein gene family AT4G00430 88.542 0.0 521.0
Nin9g01937 . 9 271 Major Intrinsic Protein gene family AT5G37810 65.299 2.04e-122 349.0
Nin9g02301 . 8 246 Major Intrinsic Protein gene family AT3G47440 61.506 1.64e-102 296.0
Nin9g02302 . 8 246 Major Intrinsic Protein gene family AT3G47440 56.904 2.09e-91 270.0