AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Nin9g02302 | ATGGCGTCTCTGAAATCTCGTCTGGAGCACTCAGTCACTCCCACAGCACTCAGATCCTATCTCGCTGAGTTTATTTCCACCTTCTTCTTCGTTTTTGCCGCAACCGGTTCTTCCATGGCTTCTCGTAAAATGATGCCCGATGCCGCAAATGATCCGTCTAACCTGGTGGTCGCTGCCGTGGCAACCGCCTTTGCTTTATCTGTGGCAGTTTTTATTGCGTCGAATATTTCCGGCGGCCACGTGAACCCGGCGGTGACATTTGGAATGGCAGTTGGTAGACATATCAGTATTCCGATGGCAATTTGTTACTGGATTTGTCAATTGCTTGGCTCCGTCATGGCTTGCCTTGTCTTGAAAATCACTACCGTCGGACAGATGACAGGTTTTGGGGCATCAATTTTAGAAGGGGTGATGACATTTGCGCTGGTGTACACGGTATATGCAGCCAGAGACTCTAGGCGTGGTACATTGGGATGTATAGGACCATTGGCCATTGGGTTTATTGCCGGAGCCAATGTGTTGGTATCAGGGCCATTTACGGGTGGATTCATGAACCCAACATATGCTTTTGGTTCGGCGGCAATTGGTGGGAGTTTCAAGAACCAAGCGGCTTATTGGGTCGGGCCATTGATCGGTGCCGGAGTTGCTGGCCTTGTTTATGATAATGTGGTGTTCCCTCCGCAACAAAACCGTGTTGATTCAATCACACTAGGCATGTTGACGTCGTCCCCACGAAACGGAAACGCAGACCAAGTGCCCGATTGGGCGACATCGGCGGAGATCAACAATCCTACGACTCGCACGTCAGCAATGGAAGCAGCTTCCGGTGAAAGAATCCAACAAGGGTTCCTAGACTTGGTCGCTATTGAATCTCACTCCCGAATATCACAAAACCCTAGATGGGTCATCGGGTAA | 915 | 50.05 | MASLKSRLEHSVTPTALRSYLAEFISTFFFVFAATGSSMASRKMMPDAANDPSNLVVAAVATAFALSVAVFIASNISGGHVNPAVTFGMAVGRHISIPMAICYWICQLLGSVMACLVLKITTVGQMTGFGASILEGVMTFALVYTVYAARDSRRGTLGCIGPLAIGFIAGANVLVSGPFTGGFMNPTYAFGSAAIGGSFKNQAAYWVGPLIGAGVAGLVYDNVVFPPQQNRVDSITLGMLTSSPRNGNADQVPDWATSAEINNPTTRTSAMEAASGERIQQGFLDLVAIESHSRISQNPRWVIG | 304 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Nin9g02302 | 304 | ProSitePatterns | MIP family signature. | 80 | 88 | IPR022357 | - | |
| Nin9g02302 | 304 | PRINTS | Major intrinsic protein family signature | 134 | 152 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Nin9g02302 | 304 | PRINTS | Major intrinsic protein family signature | 62 | 86 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Nin9g02302 | 304 | PRINTS | Major intrinsic protein family signature | 99 | 118 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Nin9g02302 | 304 | PRINTS | Major intrinsic protein family signature | 18 | 37 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Nin9g02302 | 304 | PRINTS | Major intrinsic protein family signature | 166 | 188 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Nin9g02302 | 304 | PRINTS | Major intrinsic protein family signature | 203 | 223 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Nin9g02302 | 304 | PANTHER | AQUAPORIN-8 | 8 | 226 | IPR034294 | GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER) | |
| Nin9g02302 | 304 | Gene3D | Glycerol uptake facilitator protein. | 3 | 234 | IPR023271 | - | |
| Nin9g02302 | 304 | Pfam | Major intrinsic protein | 13 | 220 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Nin9g02302 | 304 | FunFam | Probable aquaporin TIP5-1 | 2 | 232 | - | - | |
| Nin9g02302 | 304 | SUPERFAMILY | Aquaporin-like | 12 | 228 | IPR023271 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Nin9g02302 | K09873 | aquaporin TIP |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Nin | Nin-Chr7:32868519 | Nin9g02302 | Nin-Chr9:34705197 | dispersed | |
| Nin | Nin-Chr9:18787716 | Nin9g02302 | Nin-Chr9:34705197 | dispersed | |
| Nin | Nin-Chr9:30422598 | Nin9g02302 | Nin-Chr9:34705197 | dispersed | |
| Nin | Nin-Chr9:34702523 | Nin9g02302 | Nin-Chr9:34705197 | tandem |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Nin1g00748 | . | 114 | 196 | Major Intrinsic Protein gene family | AT1G31880 | 44.578 | 1.88e-15 | 77.4 | |
| Nin1g01216 | . | 1 | 280 | Major Intrinsic Protein gene family | AT4G35100 | 89.643 | 0.0 | 511.0 | |
| Nin1g01359 | . | 4 | 278 | Major Intrinsic Protein gene family | AT2G45960 | 30.795 | 3.54e-27 | 106.0 | |
| Nin1g01360 | . | 9 | 279 | Major Intrinsic Protein gene family | AT4G00430 | 29.066 | 2.28e-18 | 81.3 | |
| Nin2g02534 | . | 1 | 302 | Major Intrinsic Protein gene family | AT1G80760 | 75.166 | 1.35e-162 | 453.0 | |
| Nin2g02808 | . | 1 | 247 | Major Intrinsic Protein gene family | AT3G16240 | 83.065 | 5.62e-145 | 404.0 | |
| Nin2g03046 | . | 1 | 344 | Major Intrinsic Protein gene family | AT1G31880 | 47.815 | 8.33e-107 | 315.0 | |
| Nin3g01193 | . | 140 | 195 | Major Intrinsic Protein gene family | AT1G31880 | 46.429 | 3.66e-12 | 67.0 | |
| Nin4g00629 | . | 77 | 265 | Major Intrinsic Protein gene family | AT5G37820 | 56.316 | 1.03e-68 | 211.0 | |
| Nin4g00633 | . | 23 | 278 | Major Intrinsic Protein gene family | AT5G37820 | 47.761 | 1.55e-79 | 241.0 | |
| Nin4g02400 | . | 1 | 344 | Major Intrinsic Protein gene family | AT1G31880 | 44.02 | 1.90e-89 | 271.0 | |
| Nin5g00439 | . | 1 | 344 | Major Intrinsic Protein gene family | AT1G31880 | 62.133 | 5.35e-149 | 422.0 | |
| Nin5g01060 | . | 1 | 287 | Major Intrinsic Protein gene family | AT4G00430 | 90.625 | 0.0 | 530.0 | |
| Nin5g01670 | . | 1 | 247 | Major Intrinsic Protein gene family | AT5G47450 | 82.591 | 1.62e-145 | 405.0 | |
| Nin5g02381 | . | 1 | 245 | Major Intrinsic Protein gene family | AT2G25810 | 69.636 | 3.01e-109 | 313.0 | |
| Nin5g02637 | . | 29 | 280 | Major Intrinsic Protein gene family | AT4G10380 | 75.494 | 4.78e-130 | 371.0 | |
| Nin6g02785 | . | 285 | 343 | Major Intrinsic Protein gene family | AT1G31880 | 49.153 | 4.99e-13 | 70.1 | |
| Nin7g00182 | . | 1 | 283 | Major Intrinsic Protein gene family | AT3G54820 | 81.272 | 3.70e-173 | 478.0 | |
| Nin7g00297 | . | 4 | 251 | Major Intrinsic Protein gene family | AT2G36830 | 72.289 | 1.61e-123 | 350.0 | |
| Nin7g00298 | . | 3 | 248 | Major Intrinsic Protein gene family | AT2G36830 | 76.518 | 6.78e-131 | 368.0 | |
| Nin7g01258 | . | 29 | 203 | Major Intrinsic Protein gene family | AT1G31880 | 33.333 | 6.02e-17 | 82.0 | |
| Nin7g01606 | . | 1 | 249 | Major Intrinsic Protein gene family | AT2G36830 | 75.1 | 5.18e-134 | 376.0 | |
| Nin7g01750 | . | 1 | 202 | Major Intrinsic Protein gene family | AT3G53420 | 80.693 | 9.20e-117 | 332.0 | |
| Nin7g01752 | . | 1 | 283 | Major Intrinsic Protein gene family | AT3G53420 | 73.776 | 1.73e-154 | 431.0 | |
| Nin7g02809 | . | 50 | 280 | Major Intrinsic Protein gene family | AT4G18910 | 42.672 | 4.18e-52 | 179.0 | |
| Nin8g02382 | . | 1 | 214 | Major Intrinsic Protein gene family | AT3G56950 | 62.617 | 5.28e-96 | 280.0 | |
| Nin9g00053 | . | 13 | 262 | Major Intrinsic Protein gene family | AT3G06100 | 52.174 | 1.73e-85 | 256.0 | |
| Nin9g00316 | . | 1 | 252 | Major Intrinsic Protein gene family | AT4G01470 | 76.984 | 1.17e-139 | 390.0 | |
| Nin9g00560 | . | 1 | 285 | Major Intrinsic Protein gene family | AT3G54820 | 81.533 | 2.35e-173 | 478.0 | |
| Nin9g01078 | . | 7 | 267 | Major Intrinsic Protein gene family | AT1G17810 | 72.031 | 2.44e-125 | 355.0 | |
| Nin9g01891 | . | 1 | 286 | Major Intrinsic Protein gene family | AT4G00430 | 88.542 | 0.0 | 521.0 | |
| Nin9g01937 | . | 9 | 271 | Major Intrinsic Protein gene family | AT5G37810 | 65.299 | 2.04e-122 | 349.0 | |
| Nin9g02301 | . | 8 | 246 | Major Intrinsic Protein gene family | AT3G47440 | 61.506 | 1.64e-102 | 296.0 | |
| Nin9g02302 | . | 8 | 246 | Major Intrinsic Protein gene family | AT3G47440 | 56.904 | 2.09e-91 | 270.0 |