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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nin9g02318 ATGGACCTAAAATCAAATCACAGTGCTCCTGTTCTTACTGATCAACCACCCATGAACAAGCCACGATTAGGAATCCATACTGCTCTGCTTCCATACTCATCCCCTGGAGTCGTTTTTTCTCCTGGCATCTTTCTACCAATCCCATGGAAAAAGCCTTCCATACTCGGTGACGCCCGTGCCAATAGTTGGTTGGATGCGATGCAGTGTTCTTCACCCACTCATAAGAAGATTACTAGAGATTCAGGCATCGGGCCTGAATCAAGTGATGTGGATGTTGCATACCAAAATTGGATGGTCAAGTATCCATCCGCCATTACATCCTTTGAGCAGATAATGAACCGTGCACAGGGCAAGAGAATAGCGTTGTTTCTGGATTATGATGGAACACTATCCCCGATTGTTGACAATCCTGATCATGCATTCATGTCTAATGCTATGCGTGCGGCTGTGAAAAATGTCGCTAAATACATTCCGACAGCCATCATTAGCGGCAGAAGTCGTGATAAGGTCTGCGAGTTTGTAGGTCTGAAAGAACTATACTATGCTGGCAGTCATGGGATGGATATCATGGGTCCTGTTCGTCCTCATAATGGTCAGGCTAATTGTATAAGATCCACTGACAGTCAGGGTAAGGAAGTTAACTTGTTCCAGCCTGCTAGTGAATTCCTTCCCATGATCGACGAGGTTTTTGGATCCCTTGTTGATAAAACTGAAGACATAAAAGGAGCAAAAGTCGAGAATAATAAATTCTGTGTCTCTGTACACTACCGAAATGTAGATGAGAAGAACTGGGAAACAGTTGCACAAATTGTCCATGACATTTTGAAAAACTATCCACGTTTGCGTCTGACACACGGGCGGAAGGTTTTAGAGGTTCGCCCTGTGCTCAAGTGGGATAAAGGGAAGGCGGTTGAGTTTTTACTCGAATCACTTGGTTTAGATGATTGTGATGACGTTCTCCCTATATATGTTGGAGATGATCGGACAGATGAAGATGCATTCAAGTTTCTGAGAGATGGTAATAGAGGTTTTGGCATCTTGGTCTCTTCGGCTCCCAAGGACAGCAGCGCATTTTTCTCGCTCAGGGATCCATCCGAGGTTATGGAGTTTCTGAAATCACTGGTGATGTGGAAAAGGTCGAGTCCCCTATAA 1152 44.53 MDLKSNHSAPVLTDQPPMNKPRLGIHTALLPYSSPGVVFSPGIFLPIPWKKPSILGDARANSWLDAMQCSSPTHKKITRDSGIGPESSDVDVAYQNWMVKYPSAITSFEQIMNRAQGKRIALFLDYDGTLSPIVDNPDHAFMSNAMRAAVKNVAKYIPTAIISGRSRDKVCEFVGLKELYYAGSHGMDIMGPVRPHNGQANCIRSTDSQGKEVNLFQPASEFLPMIDEVFGSLVDKTEDIKGAKVENNKFCVSVHYRNVDEKNWETVAQIVHDILKNYPRLRLTHGRKVLEVRPVLKWDKGKAVEFLLESLGLDDCDDVLPIYVGDDRTDEDAFKFLRDGNRGFGILVSSAPKDSSAFFSLRDPSEVMEFLKSLVMWKRSSPL 383
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nin9g02318 383 Gene3D - 120 201 IPR023214 -
Nin9g02318 383 Gene3D - 229 382 IPR023214 -
Nin9g02318 383 Pfam Trehalose-phosphatase 123 365 IPR003337 GO:0005992(InterPro)
Nin9g02318 383 NCBIfam trehalose-phosphatase 117 375 IPR003337 GO:0005992(InterPro)
Nin9g02318 383 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 52 381 IPR044651 GO:0004805(PANTHER)|GO:0004805(InterPro)|GO:0005992(InterPro)|GO:0005992(PANTHER)
Nin9g02318 383 NCBIfam HAD-IIB family hydrolase 122 339 IPR006379 -
Nin9g02318 383 SUPERFAMILY HAD-like 121 377 IPR036412 -
Nin9g02318 383 CDD HAD-TPP 121 369 - -
Nin9g02318 383 FunFam Trehalose 6-phosphate phosphatase 225 382 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nin9g02318 K01087 trehalose 6-phosphate phosphatase [EC:3.1.3.12]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nin Nin-Chr3:20038659 Nin9g02318 Nin-Chr9:34870585 dispersed
Nin Nin-Chr9:15951257 Nin9g02318 Nin-Chr9:34870585 dispersed
Nin Nin-Chr9:34870585 Nin6g00127 Nin-Chr6:1520562 transposed
Nin Nin-Chr9:34870585 Nin9g02684 Nin-Chr9:38359266 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Nin1g00435 . 583 860 Trehalose Biosynthesis gene family AT1G60140 64.516 1.09e-120 363.0
Nin1g00531 . 1 853 Trehalose Biosynthesis gene family AT1G23870 75.85 0.0 1350.0
Nin1g02268 . 1 853 Trehalose Biosynthesis gene family AT4G17770 73.171 0.0 1321.0
Nin1g02415 . 2 850 Trehalose Biosynthesis gene family AT1G06410 75.754 0.0 1351.0
Nin3g01512 . 583 836 Trehalose Biosynthesis gene family AT1G70290 26.766 6.05e-10 59.3
Nin5g00303 . 1 850 Trehalose Biosynthesis gene family AT4G17770 78.756 0.0 1441.0
Nin5g02536 . 69 622 Trehalose Biosynthesis gene family AT4G24040 58.993 0.0 670.0
Nin6g01682 . 1 938 Trehalose Biosynthesis gene family AT1G78580 64.43 0.0 1211.0
Nin6g01807 . 19 839 Trehalose Biosynthesis gene family AT1G06410 70.133 0.0 1241.0
Nin8g00519 . 1 941 Trehalose Biosynthesis gene family AT1G78580 79.639 0.0 1510.0
Nin9g02318 . 590 846 Trehalose Biosynthesis gene family AT1G23870 25.442 1.34e-09 58.2
Nin9g02684 . 585 831 Trehalose Biosynthesis gene family AT1G70290 25.547 3.58e-09 56.6