AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nin9g02322 ATGTTGTCATTTTTGTCGAGGAATTTCTTGTATCTGCTGATACTCTGTTCTGGGTTTTGTTCGGCGGCGGACCCGTTTGCTAATTTCGAACTGGAATTCTCGTACATCACTGCTTCCCCTCTCGGTGTTCCTCAACAGGTTATAGCAGTTAATGGAAAGTTTCCAGGTCCAACGCTTAATGTTACTACTAATTACAATGTTGTTGTCAATGTCAAAAACAAATTGGACGAGAGCCTTCTCGTTACATGGCCTGGAATAGAAATGCGCCGTTCTTCTTGGCAAGATGGAGTTCTTGGCACTAATTGCCCCATTCCTTCAAAGTGGAACTGGACCTACCAGTTTCAGGTCAAGGATCAGATTGGCAGCTACTATTATTACCCGTCTCTGAATTTTCAGAGAGCAGCAGGTGGTTTTGGTGGCTTTGTCATCACCAACCGCAATATTATTAAGCTGCCTTTTGCTATGCCTGATGGAGATATAGTCATTACCATTGGTGATTGGTATACACGGAATCATTCGGCACTGAGGGCAAGTCTTGATGCTGGAAAGGAACTGGGCATGCCAGATGGAGTTCTCATTAATGGAAAGGGACCTTACCAATATAACTCCACAATTGTTCCAGATGGCATTAGTTATGAGACCATTAATGTCGATCCAGGCAAAACTTATCGAATCCGTGTGCACAATGTTGGAGTCTCGACTGCTTTGAATTTCCGAATTCAGAGCCATAATTTGCTTTTGGCAGAAGCAGAGGGACACTATACGTCGCAGCAAAATTATAGTAGCTTAGATATCCATGTTGGGCAGTCTTATTCTTTTTTGGTTACCATGGATCAGAATGCCAGTAGTGATTACTACATTGTTGCAAGTGCGAGACTTGTGAATGAATCACTTTGGCAAAGAGTTACAGGTGTTGCTGTTTTGCACTATTCGAATTCGAAAGGGAAAGCATTCGGCCCTCTCCCTGACCCTCCAAATGATTTCTACGACACTTCGTTTGTAATAAATCAGGCTATGTCAATCAGGATGAATAATTCGGCAAGTGGTGCACGTCCTAACCCACAAGGTTCCTTCCATTATGGTTCTATCAATGTCACCGATGTCTACACATTGAGGAGTATGCCACCCCAGATGATCAGTGGGAAATTTCGCGCAACTTTTAATGGGATCTCATTCATTAATCCTGACACACCAGTGAGACTAGCGGACAAATTCAAAGTGAAGGGTGCTTATAAACTTGACTTCCCAAATAAACCACTTCATTCTCCACCCCGGATGGACAGGTCTCTTATTAATGCTACCTATAAAGGATTTGCGGAAATCATATTGCAGAACAATGACACGGTAGCCCAGAGCTTTCACATGGACGGTTATTCTTTTTTTGTAGTTGGGATGGCTTATGGGGAGTGGACAGAGAACAGCCGGGGATCTTATAACCGGTGGGATGCAATAGCTCGTTCCACTACGCAGGTTTTCCCTGGAGGGTGGACAGCGATTTTAGTTTATCTGGATAACGTTGGAGCGTGGAACCTTAGGGCAGTAAACCTGGACAGATGGTATCTCGGCCAAGAAACATACATGAGAATCATCAATCCTGAGGACGATAGCCAGAAAACAGAACTCGCTGTGCCTGATAATGCCTTATATTGTGGTGCTCTCAGCTACATGCAAAAGCCACAAAAAACATCATCGGCATTTTCAATTGCTCATGGATTCTCAAGGCTGAATCATATGATCCTGATGGCATTTGTTGCCGGCTTGCTGCTGTTTTCATAA 1776 43.69 MLSFLSRNFLYLLILCSGFCSAADPFANFELEFSYITASPLGVPQQVIAVNGKFPGPTLNVTTNYNVVVNVKNKLDESLLVTWPGIEMRRSSWQDGVLGTNCPIPSKWNWTYQFQVKDQIGSYYYYPSLNFQRAAGGFGGFVITNRNIIKLPFAMPDGDIVITIGDWYTRNHSALRASLDAGKELGMPDGVLINGKGPYQYNSTIVPDGISYETINVDPGKTYRIRVHNVGVSTALNFRIQSHNLLLAEAEGHYTSQQNYSSLDIHVGQSYSFLVTMDQNASSDYYIVASARLVNESLWQRVTGVAVLHYSNSKGKAFGPLPDPPNDFYDTSFVINQAMSIRMNNSASGARPNPQGSFHYGSINVTDVYTLRSMPPQMISGKFRATFNGISFINPDTPVRLADKFKVKGAYKLDFPNKPLHSPPRMDRSLINATYKGFAEIILQNNDTVAQSFHMDGYSFFVVGMAYGEWTENSRGSYNRWDAIARSTTQVFPGGWTAILVYLDNVGAWNLRAVNLDRWYLGQETYMRIINPEDDSQKTELAVPDNALYCGALSYMQKPQKTSSAFSIAHGFSRLNHMILMAFVAGLLLFS 591
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nin9g02322 591 Gene3D - 20 145 IPR008972 -
Nin9g02322 591 Pfam Multicopper oxidase 34 147 IPR011707 GO:0005507(InterPro)
Nin9g02322 591 SUPERFAMILY Cupredoxins 376 552 IPR008972 -
Nin9g02322 591 Pfam Multicopper oxidase 159 313 IPR001117 -
Nin9g02322 591 SUPERFAMILY Cupredoxins 21 172 IPR008972 -
Nin9g02322 591 FunFam Monocopper oxidase-like protein SKU5 21 145 - -
Nin9g02322 591 Gene3D - 157 347 IPR008972 -
Nin9g02322 591 FunFam Monocopper oxidase-like protein 157 350 - -
Nin9g02322 591 Gene3D - 363 562 IPR008972 -
Nin9g02322 591 SUPERFAMILY Cupredoxins 156 349 IPR008972 -
Nin9g02322 591 PANTHER MULTI-COPPER OXIDASE 45 532 IPR045087 GO:0016491(PANTHER)|GO:0046658(PANTHER)
Nin9g02322 591 FunFam Monocopper oxidase-like protein 362 561 - -
Nin9g02322 591 Pfam Multicopper oxidase 396 534 IPR011706 GO:0005507(InterPro)|GO:0016491(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nin9g02322 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nin Nin-Chr8:25450195 Nin9g02322 Nin-Chr9:34912103 dispersed
Nin Nin-Chr9:8500502 Nin9g02322 Nin-Chr9:34912103 dispersed
Nin Nin-Chr9:29413115 Nin9g02322 Nin-Chr9:34912103 dispersed
Nin Nin-Chr9:34912103 Nin8g02770 Nin-Chr8:39140565 transposed