AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pdy1g05470 | ATGTCGAACGAGATGGAAAGAGAAACTCATGTCTATATGGCGAAGCTTGCCGAACAGGCCGAGCGTTACGAAGAGATGGTTGAAAGTATGAAGAGTGTTGCAAAACTAGATGTTGAACTCACTGTTGAAGAACGCAATCTGCTTTCAGTTGGATACAAGAATGTCATTGGTGCAAGGAGGGCATCTTGGCGTATTATGTCATCTATTGAACAAAAGGAGGAATCAAAAGGCAATGAAAGCAATGTCAACTTGATCAAGGGCTATCGCAAAAAGGTTGAGGATGAGCTGGCTAAAATTTGCAGTGATATTCTTGAAATTATAGATAAGCATCTGATACCCTCTTCTGGCTCAGGAGAAGCTACTGTCTTCTACTATAAGATGAAAGGTGACTACTTCCGATACCTTGCTGAATTCAAGACAGACCAGGAAAGGAAGGACGCTGCTGAACAGTCATTGAAAGGCTACGAGGCTGCTGCTGCTTCTGCAAATACAGAACTCCCTTCAACCCACCCAATTCGTCTTGGCTTGGCTCTCAATTTTTCAGTGTTCTACTATGAAATTATGAATTCTCCCGAGAGGGCCTGCCATTTGGCTAAACAAGCTTTTGACGAGGCAATCGCTGAGTTGGACTCTTTAAGCGAAGAATCTTACAAGGATAGCACCTTGATTATGCAGCTCTTGAGAGATAACCTCACTTTGTGGACTTCTGATTTGCCGGAGGATGGAGGTGATGAAAACCACTCCAAAGGTGAAGAATCCAAATCAGCTGAACCGGAGGTTAGCTCTACTGTTTAG | 795 | 43.52 | MSNEMERETHVYMAKLAEQAERYEEMVESMKSVAKLDVELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNESNVNLIKGYRKKVEDELAKICSDILEIIDKHLIPSSGSGEATVFYYKMKGDYFRYLAEFKTDQERKDAAEQSLKGYEAAAASANTELPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDSLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGDENHSKGEESKSAEPEVSSTV | 264 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pdy1g05470 | 264 | MobiDBLite | consensus disorder prediction | 240 | 256 | - | - | |
| Pdy1g05470 | 264 | SUPERFAMILY | 14-3-3 protein | 5 | 237 | IPR036815 | - | |
| Pdy1g05470 | 264 | Coils | Coil | 195 | 215 | - | - | |
| Pdy1g05470 | 264 | Pfam | 14-3-3 protein | 13 | 235 | IPR023410 | - | |
| Pdy1g05470 | 264 | PRINTS | 14-3-3 protein zeta signature | 119 | 141 | IPR000308 | - | |
| Pdy1g05470 | 264 | PRINTS | 14-3-3 protein zeta signature | 154 | 180 | IPR000308 | - | |
| Pdy1g05470 | 264 | PRINTS | 14-3-3 protein zeta signature | 88 | 112 | IPR000308 | - | |
| Pdy1g05470 | 264 | PRINTS | 14-3-3 protein zeta signature | 208 | 237 | IPR000308 | - | |
| Pdy1g05470 | 264 | PRINTS | 14-3-3 protein zeta signature | 39 | 68 | IPR000308 | - | |
| Pdy1g05470 | 264 | PRINTS | 14-3-3 protein zeta signature | 181 | 207 | IPR000308 | - | |
| Pdy1g05470 | 264 | SMART | 1433-4 | 7 | 248 | IPR023410 | - | |
| Pdy1g05470 | 264 | PIRSF | 14-3-3 | 1 | 251 | IPR000308 | - | |
| Pdy1g05470 | 264 | MobiDBLite | consensus disorder prediction | 235 | 264 | - | - | |
| Pdy1g05470 | 264 | FunFam | 14-3-3 protein epsilon | 2 | 248 | - | - | |
| Pdy1g05470 | 264 | Coils | Coil | 145 | 165 | - | - | |
| Pdy1g05470 | 264 | ProSitePatterns | 14-3-3 proteins signature 2. | 217 | 236 | IPR023409 | - | |
| Pdy1g05470 | 264 | ProSitePatterns | 14-3-3 proteins signature 1. | 45 | 55 | IPR023409 | - | |
| Pdy1g05470 | 264 | Gene3D | - | 1 | 248 | IPR036815 | - | |
| Pdy1g05470 | 264 | Coils | Coil | 13 | 33 | - | - | |
| Pdy1g05470 | 264 | PANTHER | 14-3-3 PROTEIN | 6 | 240 | IPR000308 | GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pdy1g05470 | K06630 | 14-3-3 protein epsilon |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 131418 | Pdy1g05470 | Pdy2g00209 | |
| 131419 | Pdy1g05470 | Pdy3g03452 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Pdy | Pdy-Chr1:115758891 | Pdy9g01905 | Pdy-Chr9:42517104 | dispersed | |
| Pdy | Pdy-Chr1:115758891 | Pdy2g00209 | Pdy-Chr2:3961711 | wgd | |
| Pdy | Pdy-Chr1:115758891 | Pdy3g03452 | Pdy-Chr3:93892875 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Pdy1g05470 | ACH | 9 | 264 | 14-3-3 family | AT1G26480 | 84.766 | 1.05e-162 | 450.0 | |
| Pdy2g00209 | ACH | 6 | 256 | 14-3-3 family | AT1G26480 | 85.259 | 3.37e-162 | 449.0 | |
| Pdy3g00073 | ACH | 4 | 247 | 14-3-3 family | AT5G10450 | 85.656 | 3.80e-159 | 439.0 | |
| Pdy3g00106 | . | 2 | 259 | 14-3-3 family | AT1G78300 | 86.873 | 1.22e-168 | 464.0 | |
| Pdy3g00130 | . | 1 | 251 | 14-3-3 family | AT2G42590 | 72.51 | 1.29e-134 | 378.0 | |
| Pdy3g03452 | ACH | 6 | 255 | 14-3-3 family | AT1G26480 | 79.6 | 1.53e-152 | 424.0 | |
| Pdy3g03911 | . | 6 | 263 | 14-3-3 family | AT2G42590 | 76.834 | 3.73e-146 | 408.0 | |
| Pdy4g00558 | ACH | 1 | 263 | 14-3-3 family | AT2G42590 | 77.186 | 4.32e-151 | 420.0 | |
| Pdy5g02636 | ACH | 3 | 259 | 14-3-3 family | AT1G78300 | 87.597 | 6.91e-166 | 457.0 | |
| Pdy5g02676 | . | 1 | 248 | 14-3-3 family | AT5G65430 | 84.274 | 3.00e-158 | 437.0 | |
| Pdy6g01338 | ACH | 4 | 248 | 14-3-3 family | AT5G65430 | 86.531 | 1.46e-161 | 446.0 | |
| Pdy6g01618 | . | 2 | 256 | 14-3-3 family | AT1G78300 | 86.719 | 4.42e-163 | 450.0 | |
| Pdy6g02651 | ACH | 2 | 252 | 14-3-3 family | AT5G38480 | 87.251 | 3.77e-167 | 460.0 | |
| Pdy8g01663 | . | 2 | 256 | 14-3-3 family | AT1G78300 | 87.109 | 8.09e-164 | 452.0 | |
| Pdy8g01983 | ACH | 3 | 257 | 14-3-3 family | AT3G02520 | 86.275 | 2.98e-161 | 446.0 | |
| Pdy9g00014 | . | 4 | 204 | 14-3-3 family | AT5G65430 | 81.095 | 1.94e-119 | 340.0 | |
| Pdy9g00015 | . | 227 | 247 | 14-3-3 family | AT5G65430 | 80.952 | 7.30e-08 | 43.5 | |
| Pdy9g01905 | ACH | 1 | 263 | 14-3-3 family | AT2G42590 | 77.947 | 6.99e-153 | 424.0 |