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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy1g05486 ATGGCTAACAAAGACAGAGGGGAGGTCAGGATTCATGAAAGTTTAGATGAACTTAGCACGGATTTAGCTGATTATATAGCAGAATTATCTGAAGCATCAGTTAAAGAGCGTGGCGTTTTTGCTATTGCTTTATCTGGTGGTTCACTCATTAGCTTGATGAGGAATTTGTGTGGAGCTCCTTATAACAAGACTGTAGATTGGTCCAAATGGTATATATTTTGGGCAGATGAACGTGTGGTTGCCAAGAATCACGTTGATAGCAACTATAAACTTGCCAAAGATCATCTTTTGTCTAAGTTGCCTGTTGTTCCAAGCCATGTACATTCCATCAATGATTCTCTGACTGCAGAAGAAGCTGCAAATGACTACGAGTTTGTGATCAGACAGCTGGTCAGGACCCGTGTGGTCAACGTTTCTGATGTCAGCGACTGCCCGAAGTTTGATTTAATCCTTTTAGGGATGGGTCCGGATGGCCATGTGGCATCTTTATTCCCGAACCATCCGGTTCTTGAAGAAAAGAATGAGTGGGTGACATTTATCACCACTTCCCCTAAGCCACCTCCTGAAAGAATCACATTCACCCTGCCTGTTATCAACTCTGCTGCCAATGTGGCAGTGGTGGTGACAGGTGGCGGGAAAGCGGAAGCTGCACGTCTGGCAATAGATGACGTGGGCCCCGAGTGCCATGTGTTGCCAGCTAGGATGATTGAACCAGCTGTAGGGAAACTGGTTTGGTTTTTGGATAGCCAGGCTGGTTCAAAGCTCAAGGGCTTTTCTAAATTTTCTAAGTAG 792 45.2 MANKDRGEVRIHESLDELSTDLADYIAELSEASVKERGVFAIALSGGSLISLMRNLCGAPYNKTVDWSKWYIFWADERVVAKNHVDSNYKLAKDHLLSKLPVVPSHVHSINDSLTAEEAANDYEFVIRQLVRTRVVNVSDVSDCPKFDLILLGMGPDGHVASLFPNHPVLEEKNEWVTFITTSPKPPPERITFTLPVINSAANVAVVVTGGGKAEAARLAIDDVGPECHVLPARMIEPAVGKLVWFLDSQAGSKLKGFSKFSK 263
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy1g05486 263 CDD 6PGL 16 247 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Pdy1g05486 263 NCBIfam 6-phosphogluconolactonase 11 255 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Pdy1g05486 263 SUPERFAMILY NagB-RpiA-CoA transferase-like 9 256 IPR037171 -
Pdy1g05486 263 Gene3D - 5 258 - -
Pdy1g05486 263 PANTHER 6-PHOSPHOGLUCONOLACTONASE 3 256 IPR039104 -
Pdy1g05486 263 Pfam Glucosamine-6-phosphate isomerases-6-phosphogluconolactonase 15 245 IPR006148 GO:0005975(InterPro)
Pdy1g05486 263 FunFam Probable 6-phosphogluconolactonase 4 256 - -
Pdy1g05486 263 Coils Coil 15 35 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy1g05486 K01057 6-phosphogluconolactonase [EC:3.1.1.31]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4108157 Pdy Pdy1g05486 Pdy-Chr1:115936833 Pdy9g00332 Pdy-Chr9:6024420