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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy3g03085 ATGGAAATGCAAAATGACTTCGATCGGCTTCTTTTTTTCGAGCATGCTCGCCGCAGCGCCGAAGTTACTTACGCGAAAAACCCTCTCGACATCGAGAACCTAACCAGATGGGGAGGGGCTTTGCTTGAATTGTCGACTTTTCAGAGTGTTGAGGAATCAAAATCTATGATTAAAGATGCTATATCGAAATTGGATGAAGCATTGTCGATTGATCCAAAGAAACATGATGCTTTGTGGTGTATGGGCAATGCACAAACTTCTTATGCTTTTCTGACTCCTGACAAAGATGAGGCCAAGGGTTATTTTGATTCAGCTTATACTTACTTTCAGCAGGCTGTTGATGAGGATCCAGGGAACGAACTTTACCTCAAGTCATTCGAAGTGGCAACAAAGGCTCCTCAATTACACTCAGAGCTCCATAAACAGAGTTTTGCTCAACAAACCATGGGATCAGGGGCAGCAGGAGGTCCTTCCACTTCTTCAAGTGTCAAGGGACCCAAGGCACAAAAGAGTAGCGACCTGAAGTATGATATATTTGGATGGGTTATTCTAGCTGTTACGATTGTGGCATGGGTTGGATTCGCTAAAGCAAATGTACCCTCACCACCTCCTCGATAA 618 44.17 MEMQNDFDRLLFFEHARRSAEVTYAKNPLDIENLTRWGGALLELSTFQSVEESKSMIKDAISKLDEALSIDPKKHDALWCMGNAQTSYAFLTPDKDEAKGYFDSAYTYFQQAVDEDPGNELYLKSFEVATKAPQLHSELHKQSFAQQTMGSGAAGGPSTSSSVKGPKAQKSSDLKYDIFGWVILAVTIVAWVGFAKANVPSPPPR 205
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy3g03085 205 MobiDBLite consensus disorder prediction 148 168 - -
Pdy3g03085 205 Pfam Plant specific mitochondrial import receptor subunit TOM20 7 196 - -
Pdy3g03085 205 Gene3D Tetratricopeptide repeat domain 1 150 IPR011990 GO:0005515(InterPro)
Pdy3g03085 205 SUPERFAMILY TPR-like 13 124 IPR011990 GO:0005515(InterPro)
Pdy3g03085 205 PANTHER MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20-1-RELATED 1 204 IPR010547 GO:0005742(InterPro)|GO:0045040(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy3g03085 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr2:8172354 Pdy3g03085 Pdy-Chr3:88524339 wgd
Pdy Pdy-Chr3:88524339 Pdy3g04125 Pdy-Chr3:103740800 wgd