AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy3g03114 ATGGGTAGTGCGTTTAATCCACAAGTTTTGGTGGAAAAGCTGGCCAAACTCAATAGTTCACAGCAAAGCATTGAGACTCTGTCACACTGGTGTATCTATCATATAGCAAAGGCAAAACAAATTGTTGAAACATGGGCTAGGCAATTCCGTTGCTCCCCACGTGAGCAACGTGTAGCTTTTCTCTATCTTGCAAATGATATACTGCAGAATGGTAGGCGAAGGGGTTCAGAGTTTGTTGGTGAATTCTGGAAGGTTCTTCCAGAAGCACTCCATGATGTAATTGATAATACCGATGAATCCGGAAGAAATGCTGCGTTACGCCTGGTCAAGATTTGGGAGGAAAGAAAGGTTTTTGGCTCTCGGGGTCAGATCCTGAAGGAAGAACTGGTTGGAAGGCACCTAGAAACTAGTAACAGAAACGAAAAGCATTCAGGGTCAAAATTGCTACGGTCTGTTGAAAATGCATTGGACAAGATAGTTTCAGGATATCAGTATATTTATGGTGGTCAGATTGATGAAGATGCCATAATCAGCAAATGCAAAATGAATATTAGCTGTGTTGAAAAAGTGGAGAAAGAATTCAGTGGTGATTTGAGCTCTGCACAAGTGAATGGGTTGGGTATGATGGAAGAGCTCAGGGGGCACAACGCCACTTTGAAGGATTGTATCGAGCAACTTTCAGCTGTAGAAGCGTTACGAATTAATCTTGTTTGTTATTTACGGGAGGCTCTTCAAGAGCAGGAAATGAAGCTGGATCAAGTCAGTAATGTACTTAAGGCTGCACATACCCAATCGGAAAAGGCTGATAATTTATGCAGGCAATTGCAAAATCCTGATGGCACAAAGTTACTTCCTGGAATTGATGAACCATCTGCACCATTAATGTCCACACAGAACATTCCCGTCTCTGATCAACCCAATGATTATAATAAATCTGCTGCGGCTGCAGTGGCGGCAAGCTCCACATCTTCATCTGAAATGCTCTCATCTGTCCTTTCTTCCTTTGCTTCTGAGGGAGTTGTCAGCAATTCAGTTAACGAATCATCATCGGTTGACTACCCTCCAGAGAAGAGAACCAAGATCGAGAATGTTCAAATTCCTCGACCACCTGTTCCATCAGAGTCACCCCATGATCAACCACCACCTCCACCATCATCTCCACTGCCTCCGCGGCCTCTACCTCCCATGCAAGCATACCGTGTACCCCCATTCCTTCAGACTGCAGGGTCAGTACTCTATGGCTGCACTAACCAACCACCACCTCGGTCTTTGCCAGGGTATCCGACCTTCCGCCCTCTGATCAACAGTGGTGGTCCATTCACACCAGCACCAGCACCACCACCACCACCAACTGCTTACCAGGCCTATCAAATGGAAGGTGGGTTCTCTACCCAACCAATGGCCCCTATGTCTAGACAGTAG 1422 45.71 MGSAFNPQVLVEKLAKLNSSQQSIETLSHWCIYHIAKAKQIVETWARQFRCSPREQRVAFLYLANDILQNGRRRGSEFVGEFWKVLPEALHDVIDNTDESGRNAALRLVKIWEERKVFGSRGQILKEELVGRHLETSNRNEKHSGSKLLRSVENALDKIVSGYQYIYGGQIDEDAIISKCKMNISCVEKVEKEFSGDLSSAQVNGLGMMEELRGHNATLKDCIEQLSAVEALRINLVCYLREALQEQEMKLDQVSNVLKAAHTQSEKADNLCRQLQNPDGTKLLPGIDEPSAPLMSTQNIPVSDQPNDYNKSAAAAVAASSTSSSEMLSSVLSSFASEGVVSNSVNESSSVDYPPEKRTKIENVQIPRPPVPSESPHDQPPPPPSSPLPPRPLPPMQAYRVPPFLQTAGSVLYGCTNQPPPRSLPGYPTFRPLINSGGPFTPAPAPPPPPTAYQAYQMEGGFSTQPMAPMSRQ 473
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy3g03114 473 ProSiteProfiles CID domain profile. 2 134 IPR006569 -
Pdy3g03114 473 FunFam ENTH-VHS family protein isoform 1 2 130 - -
Pdy3g03114 473 Gene3D - 2 130 IPR008942 -
Pdy3g03114 473 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN 3 462 - GO:0000993(PANTHER)|GO:0031124(PANTHER)
Pdy3g03114 473 MobiDBLite consensus disorder prediction 275 307 - -
Pdy3g03114 473 MobiDBLite consensus disorder prediction 339 399 - -
Pdy3g03114 473 SMART 558neu5 9 130 IPR006569 -
Pdy3g03114 473 MobiDBLite consensus disorder prediction 369 399 - -
Pdy3g03114 473 SUPERFAMILY ENTH-VHS domain 11 117 IPR008942 -
Pdy3g03114 473 CDD CID-RPRD-like 7 129 - -
Pdy3g03114 473 MobiDBLite consensus disorder prediction 422 455 - -
Pdy3g03114 473 MobiDBLite consensus disorder prediction 439 453 - -
Pdy3g03114 473 Coils Coil 244 264 - -
Pdy3g03114 473 MobiDBLite consensus disorder prediction 292 307 - -
Pdy3g03114 473 Pfam CID domain 9 120 IPR006569 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy3g03114 K15559 regulator of Ty1 transposition protein 103
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Event-related genes

Select Gene_1 Gene_2 Event_name
132458 Pdy3g03114 Pdy8g02410
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr3:88960241 Pdy5g02732 Pdy-Chr5:78003690 dispersed
Pdy Pdy-Chr3:88960241 Pdy8g02410 Pdy-Chr8:59265009 wgd