AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy3g03119 ATGGCTGTCAAGGCGGCGATTCATATCTCCGACGTACCACATCTGGATCAGGTCAACGACAGCGCCGCCGCGTCGTTGTCTCTTTACTCCACCACCCGTCTTCCCGCCGGACTGGATGTGAGTAATGGCCGGAAAATTTTGCCCAAATTCACGGTGGTCGGCCACCGTGGTCATGGGATGAACGTCTTACAGTCCAACGATAAGAGAATGGTTGCTTATAAAGAGAACTCGATTCTTTCATTCAATAACGCTGCCAATCATCCCATTGATTACATTGAATTTGACGTTCAGGTGACAAAAGACGACACACCAGTCATCTTTCACGATAATTTCATCGTATCTGAAGAGAATGGTAACATAGTTGAAAAACGAGTGACCGATTTGACTTTGGATGAATTCTTTAGCTATGGTCCTCAAAGAGAAACAGGGCAAGTGGGCAAATCTTTGCTGAGAGAAACAAACGGGAAGATTGTTGGGTGGGAAGTTGAGATTGATGATCATTCTTGTACTTTAAAAGAAGCTTTTCAGAAAGTAAACCCTTGTTTGGGATTCAACATTGAGTTGAAATTTGATGATTATGTTGTCTATGAACAAGAGTATCTCATTCATGTTCTTCAAGTAATCTTGAAGGTGGTATACGAAAACGCCCAAGATAGACCTGTAATTTTTTCAAGCTTTCAGCCTGATGCAGCCTTGCTTATGAAGAAACTTCAGCATCAATACCCTGTGTACTTCTTGACAAATGGAGGAAACGAGATATACGATGATGTACGAATGAACTCATTAGACGAAGCCAAGAAGCTGGCAATAGCAGGTGGATTGGACGGAGTTGTTTCAGAAGTAAAGGGTATCTTTAGAAACCCTTCAGTCGTACGAGAGATTAAAGAATCAAATCTCTCCCTCCTTACTTATGGCAAATTAAATAACGTCCCTGAAGCTGTACATGTTCAATATCTTATGGGTGTAGAAGGCGTAATCGTTGATTTAGTACAAGAAATATCAATTGCTGTTGCAAGTATACAAACTAGAAAAACTGTTTATGAAGGGGAGGAAGGAGGATCACATGTGAAAGAGAACGCAGACAAGATCGAATTGTCGTTTTTGCTGAATTTGATTTCACAAGTGATTCAACATTGA 1137 41.07 MAVKAAIHISDVPHLDQVNDSAAASLSLYSTTRLPAGLDVSNGRKILPKFTVVGHRGHGMNVLQSNDKRMVAYKENSILSFNNAANHPIDYIEFDVQVTKDDTPVIFHDNFIVSEENGNIVEKRVTDLTLDEFFSYGPQRETGQVGKSLLRETNGKIVGWEVEIDDHSCTLKEAFQKVNPCLGFNIELKFDDYVVYEQEYLIHVLQVILKVVYENAQDRPVIFSSFQPDAALLMKKLQHQYPVYFLTNGGNEIYDDVRMNSLDEAKKLAIAGGLDGVVSEVKGIFRNPSVVREIKESNLSLLTYGKLNNVPEAVHVQYLMGVEGVIVDLVQEISIAVASIQTRKTVYEGEEGGSHVKENADKIELSFLLNLISQVIQH 378
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy3g03119 378 Gene3D Phosphatidylinositol (PI) phosphodiesterase 46 336 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Pdy3g03119 378 ProSiteProfiles GP-PDE domain profile. 50 337 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Pdy3g03119 378 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 44 340 IPR051578 GO:0046475(PANTHER)
Pdy3g03119 378 FunFam Glycerophosphodiester phosphodiesterase GDPD2 41 339 - -
Pdy3g03119 378 SUPERFAMILY PLC-like phosphodiesterases 48 331 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Pdy3g03119 378 Pfam Glycerophosphoryl diester phosphodiesterase family 55 330 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy3g03119 K18696 glycerophosphodiester phosphodiesterase [EC:3.1.4.46]
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
132459 Pdy3g03119 Pdy8g02412
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr3:89037325 Pdy3g04093 Pdy-Chr3:103278436 wgd
Pdy Pdy-Chr3:89037325 Pdy8g02412 Pdy-Chr8:59280812 wgd