AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy3g03120 ATGAAGTCATGGAAGCTTGGGCGTAAACTGTCGTTGCAGAAGAGCGATTTCAAGGAGATGAGAGATCACCAGCCTTCTGCCCATTTAGATGAGCTTGATCAGGCTTCCAAGGATATGCAAGACATGCGAAGCTGCTATGATGGCTTGTTATCTGCTGCTGCTGCAACAGCAAATAGTATATATGAATTTTCGGAGTCGCTAAATGAAATGGGGAACTGTTTAATGGGGAAAACTGCCGTGCACGATAATGCCGAAAATGGAAAAGTGCTAACAACTTTGGGAAATATGCAGTTGGAACTTCAGAAAATTGCTGATACTTATCGTTCTTATGTGATTGTGACAATTACAAACCCAGCAGAGTCTCTCCTCAGTGAGCTACGGAAAGTGGAGGAGATGAAACTTCAGTGTGATGAAAAAAGAGATGTCTATGAATACATGATGGCACAACACAAAGAGAAGGGAAAACTGAGAAATGGTAAAGCTGAAAGTTCTATCTTTCAAAAACTGCAAGAAGCTCAAGAGGAATATGATGAAGTGACTAGATTATGTGTATTTCGGGTTAAATCACTGAAAGAAGGACAATGGCGCAGTCTATTAACTCAAGCTGCTCGCCATCATGCTGCACAGTTGAATTTCTTTCGCATGGGACTCAAAGCTGTTGAAGCAGTTGAACCTTTAATAAGAAATGTTGCTGAAAAGCATCGCATTGATTATCAACTGAGTGGACTATATGATCGGGGGGAGTCCCGGGAAGGTGAACCTATGAGTGGCTATGAAAGTACTGATGATGGAGAACTGAGTTTTGATTACAAGCAGAAGAAACAAGGGCTTGATGATGATGGCACCTCACCAAATCCGATGGAGCTGGACCGGGTAGATGTCCCATATTTTCAAGCTTCAATTTTAGAAGATTCAGAGATAAATCTGAGGAAACATAAAGGGGATCAACATTATGGTCAGCAAACTAGAGTTAGCAGCTATTCCGCCCCACTATTCCCTGACAAGATTAATGCTGCATCTGAAAGGCATAAAGAGACACAACCCACACGAAAATTTTACTCTTATGTACTACCTCCCCCTGTTGTAGATACCCGGAATCCAAATTCAAGAACCTCTACATCTGCTACTCAATCCACTCCAATTCAAAATTTGCAACATGAGAACAACACATCGACATCTGCGTTAACCTCAAAGATCCAGTCTGCGACAAAAGATGGAAACACCGTTAATTCTCCCATCCAGTTACCCGCTCCTTCTACTGGAAGATTTTCATTCTCACAATGGGATAATTATAGCAGTACTGAAAGTAAAGTAGCCAAACGACAATCTTATTCTGGTCCATTACCACCAAGCAAGCAATTTTCTTTCAAGATGGCATCAAATAATAGTGGGCCCATTACTTCTACCGAACTTCCTCAACCACCTTCTCGTGTGCCGTATTCTCAGCCAAATTTGTCATCAAACGTGCCCCGTAGTGCTTCACCTCCCCCTTTATCTTCACCTAAAATAAGTGAGCTTCATGAGCTTCCTAGGCCTCCTTCTAGTAGTAATTTAGCTCTTTCAAAACCTGTTGGTATGTCTAGTGGTTTGGTTGGACATCCAGCACCCTTACTTCTAAAGAATCAGGAGATTTCTCCACCAAATAAAAGGGCTATGCTAACATCGACTTGTGCATCCCCTCTTCCACTTCCCCCTTGTGTTGTCAAAATCCCCTCGAGTAATGCTGAGACGTAA 1734 42.21 MKSWKLGRKLSLQKSDFKEMRDHQPSAHLDELDQASKDMQDMRSCYDGLLSAAAATANSIYEFSESLNEMGNCLMGKTAVHDNAENGKVLTTLGNMQLELQKIADTYRSYVIVTITNPAESLLSELRKVEEMKLQCDEKRDVYEYMMAQHKEKGKLRNGKAESSIFQKLQEAQEEYDEVTRLCVFRVKSLKEGQWRSLLTQAARHHAAQLNFFRMGLKAVEAVEPLIRNVAEKHRIDYQLSGLYDRGESREGEPMSGYESTDDGELSFDYKQKKQGLDDDGTSPNPMELDRVDVPYFQASILEDSEINLRKHKGDQHYGQQTRVSSYSAPLFPDKINAASERHKETQPTRKFYSYVLPPPVVDTRNPNSRTSTSATQSTPIQNLQHENNTSTSALTSKIQSATKDGNTVNSPIQLPAPSTGRFSFSQWDNYSSTESKVAKRQSYSGPLPPSKQFSFKMASNNSGPITSTELPQPPSRVPYSQPNLSSNVPRSASPPPLSSPKISELHELPRPPSSSNLALSKPVGMSSGLVGHPAPLLLKNQEISPPNKRAMLTSTCASPLPLPPCVVKIPSSNAET 577
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy3g03120 577 CDD BAR 38 225 - -
Pdy3g03120 577 MobiDBLite consensus disorder prediction 364 424 - -
Pdy3g03120 577 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 1 574 IPR037488 -
Pdy3g03120 577 SUPERFAMILY BAR-IMD domain-like 30 227 IPR027267 -
Pdy3g03120 577 MobiDBLite consensus disorder prediction 357 424 - -
Pdy3g03120 577 MobiDBLite consensus disorder prediction 246 265 - -
Pdy3g03120 577 Gene3D Arfaptin homology (AH) domain-BAR domain 23 239 IPR027267 -
Pdy3g03120 577 MobiDBLite consensus disorder prediction 439 520 - -
Pdy3g03120 577 MobiDBLite consensus disorder prediction 439 493 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy3g03120 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
132460 Pdy3g03120 Pdy6g01927
132461 Pdy3g03120 Pdy8g02414
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr2:9081411 Pdy3g03120 Pdy-Chr3:89045977 wgd
Pdy Pdy-Chr3:89045977 Pdy3g04091 Pdy-Chr3:103230030 wgd
Pdy Pdy-Chr3:89045977 Pdy6g01927 Pdy-Chr6:56058915 wgd
Pdy Pdy-Chr3:89045977 Pdy8g02414 Pdy-Chr8:59292450 wgd