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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy3g03125 ATGGAGAGAAACGAGGCGTGTGGCTTGACGGCATTTGGTGGTTTCGAAATCGGACTCGGAATGGGTATGAATTTCGCTGCTGGAGTTCAAGATAACGACTACAAAACCAATAAATCTGCTTCTACTGCCGTTGACAGAGATCTGGTGGCTGCCGCTCGTTTCGATTTCCTTAAGAAGAAAAGGATGCCGAGATTCCGGCGAAGTGCTTCCACCGCCGCCGTCCGCTCCTTTCGCCCCTTCAATTCCTTCGCCACTCCTCTACCCGCAAGTCTTGTTGATCAGGGACGGTTGACGTTTCTCTTTAGCAAAAAGCTGCAAAAAAGTGATGTAGGTGTCCTAAAGAGGATCGTTCTGCCAAAGAAACCAGCAGAAACACACCTACCTGCTCTGATTGCCAAGGAAGGTATCATTTTGGAGATGGATGACATGGATGGCATGCATGCGTGGTGTTTCAAGTTTAGGTTCTGGCCAAACAACAACAGCCGCATGTATGTCCTTGAGGGCACTGGTGAATTTGCTGAGGAGCATGAGCTGCAACTGGGTGACTACATAATGTTGTATCGAGATTCGGTGAATCTCAACTATGTGATACAGGCTGTTAAAGCTTATGAAGTTGAGGAATATGCAAAGAAAGAAGTGAAAACAAACCTGGGTAGTCAAGGGAAATCTGGCAAAGCACCGCCGAGTAATGGATGTCTAATGAACCAGAACTGGCCCTGGGGTGGTGGTGGTCTCGAGGTTGAGGTGTTGAACACCACTAACTACCCAATGAACGTTTCAAGCATGGAGGATCAAACGGGTATGACTTTCATATACGATACCAGCTATTCCAATGACACTATGATGCCACTCGATTTCTTGGGTGGATTCATGACAAGCTATCCAACACCTCAGCCAAACTTTGCTATCGAGAATTTGTCTATTGACGATCTGTACAAGATCTAG 945 46.77 MERNEACGLTAFGGFEIGLGMGMNFAAGVQDNDYKTNKSASTAVDRDLVAAARFDFLKKKRMPRFRRSASTAAVRSFRPFNSFATPLPASLVDQGRLTFLFSKKLQKSDVGVLKRIVLPKKPAETHLPALIAKEGIILEMDDMDGMHAWCFKFRFWPNNNSRMYVLEGTGEFAEEHELQLGDYIMLYRDSVNLNYVIQAVKAYEVEEYAKKEVKTNLGSQGKSGKAPPSNGCLMNQNWPWGGGGLEVEVLNTTNYPMNVSSMEDQTGMTFIYDTSYSNDTMMPLDFLGGFMTSYPTPQPNFAIENLSIDDLYKI 314
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy3g03125 314 CDD B3-DNA 99 198 IPR003340 GO:0003677(InterPro)
Pdy3g03125 314 ProSiteProfiles B3 DNA-binding domain profile. 101 203 IPR003340 GO:0003677(InterPro)
Pdy3g03125 314 SUPERFAMILY DNA-binding pseudobarrel domain 99 198 IPR015300 -
Pdy3g03125 314 Pfam B3 DNA binding domain 101 198 IPR003340 GO:0003677(InterPro)
Pdy3g03125 314 Gene3D - 97 216 IPR015300 -
Pdy3g03125 314 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 35 201 IPR044800 GO:0003700(InterPro)
Pdy3g03125 314 SMART B3-2 101 203 IPR003340 GO:0003677(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy3g03125 K09287 RAV-like factor
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr3:89108166 Pdy7g00995 Pdy-Chr7:43439648 dispersed
Pdy Pdy-Chr3:89108166 Pdy5g02585 Pdy-Chr5:75750142 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Pdy1g02949 ACH 4 769 B3 DNA Binding Superfamily AT2G30470 42.805 0.0 598.0
Pdy1g04598 ACH 1 668 B3 DNA Binding Superfamily AT4G30080 54.971 0.0 669.0
Pdy2g02921 ACH 13 591 B3 DNA Binding Superfamily AT2G46530 60.269 0.0 681.0
Pdy2g03573 . 12 669 B3 DNA Binding Superfamily AT4G30080 56.268 0.0 695.0
Pdy2g03903 . 2 693 B3 DNA Binding Superfamily AT2G28350 55.43 0.0 691.0
Pdy2g03925 ACH 62 772 B3 DNA Binding Superfamily AT5G60450 55.677 0.0 736.0
Pdy3g00496 ACH 251 387 B3 DNA Binding Superfamily AT4G32010 42.029 2.12e-30 117.0
Pdy3g00594 ACH 1 850 B3 DNA Binding Superfamily AT5G62000 59.977 0.0 993.0
Pdy3g02318 ACH 1 802 B3 DNA Binding Superfamily AT5G37020 65.428 0.0 961.0
Pdy3g02748 ACH 109 222 B3 DNA Binding Superfamily AT3G19184 48.246 1.27e-31 120.0
Pdy3g03025 . 178 289 B3 DNA Binding Superfamily AT1G05930 32.5 3.74e-12 63.2
Pdy3g03125 . 45 313 B3 DNA Binding Superfamily AT3G26790 44.364 8.78e-60 192.0
Pdy3g04685 ACH 1 616 B3 DNA Binding Superfamily AT4G23980 57.727 0.0 687.0
Pdy4g00103 . 43 199 B3 DNA Binding Superfamily AT5G42700 38.65 6.16e-29 109.0
Pdy4g00106 ACH 108 230 B3 DNA Binding Superfamily AT3G19184 53.659 5.71e-40 142.0
Pdy4g00107 ACH 112 249 B3 DNA Binding Superfamily AT3G19184 52.899 1.78e-43 152.0
Pdy4g00957 . 2 111 B3 DNA Binding Superfamily AT5G66980 38.053 9.63e-20 81.3
Pdy4g01473 . 3 664 B3 DNA Binding Superfamily AT1G59750 65.766 0.0 843.0
Pdy4g04226 . 1 797 B3 DNA Binding Superfamily AT5G37020 58.789 0.0 855.0
Pdy4g04328 . 1 587 B3 DNA Binding Superfamily AT2G33860 50.245 0.0 548.0
Pdy4g04412 . 15 660 B3 DNA Binding Superfamily AT4G21550 36.179 1.37e-121 379.0
Pdy5g00336 ACH 1 855 B3 DNA Binding Superfamily AT5G62000 58.891 0.0 961.0
Pdy5g00719 . 1 240 B3 DNA Binding Superfamily AT3G19184 53.629 2.73e-75 228.0
Pdy5g01954 . 8 749 B3 DNA Binding Superfamily AT4G32010 49.509 0.0 716.0
Pdy5g02429 . 12 719 B3 DNA Binding Superfamily AT3G24650 42.727 8.09e-143 434.0
Pdy5g02567 . 4 218 B3 DNA Binding Superfamily AT5G58280 54.222 2.16e-71 220.0
Pdy5g02585 ACH 1 672 B3 DNA Binding Superfamily AT4G32010 49.379 0.0 666.0
Pdy6g00170 ACH 32 463 B3 DNA Binding Superfamily AT1G19850 72.874 0.0 650.0
Pdy6g01085 ACH 1 576 B3 DNA Binding Superfamily AT4G30080 55.426 0.0 578.0
Pdy6g02384 . 115 236 B3 DNA Binding Superfamily AT3G19184 50.0 2.57e-38 139.0
Pdy6g02388 ACH 115 236 B3 DNA Binding Superfamily AT3G19184 48.361 2.22e-37 137.0
Pdy6g03153 . 20 187 B3 DNA Binding Superfamily AT4G01580 25.862 1.45e-14 70.5
Pdy7g01566 ACH 5 227 B3 DNA Binding Superfamily AT3G19184 60.619 3.70e-86 255.0
Pdy7g01567 ACH 102 219 B3 DNA Binding Superfamily AT3G19184 41.525 3.80e-30 112.0
Pdy7g01837 . 5 490 B3 DNA Binding Superfamily AT1G19220 67.409 0.0 645.0
Pdy8g00108 . 170 289 B3 DNA Binding Superfamily AT1G05930 35.156 1.23e-15 72.4
Pdy8g01800 ACH 1 794 B3 DNA Binding Superfamily AT5G37020 66.017 0.0 1022.0
Pdy8g02531 ACH 62 772 B3 DNA Binding Superfamily AT5G60450 54.101 0.0 749.0
Pdy8g02911 ACH 1 662 B3 DNA Binding Superfamily AT4G30080 57.544 0.0 715.0
Pdy9g00035 . 1 470 B3 DNA Binding Superfamily AT5G20730 76.907 0.0 715.0
Pdy9g01983 ACH 33 126 B3 DNA Binding Superfamily AT4G21550 45.263 2.61e-22 93.6
Pdy9g02640 ACH 1 616 B3 DNA Binding Superfamily AT4G23980 57.864 0.0 687.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Pdy B3 6.2e-13 CL0405 TF B3