AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy3g03135 ATGTTGAGAGCCGGAAGCAGGAGACTACTAGCTTCTCTCACGTCTCCATGGAGGCACACAAATCCTGCCTCCATGACCATCATTTCCAAAAACACTCAGATCGAGGACGCCGCCGACTATGATCTCCGATCGAACCACAGCTCATCCCTATTCAACCATCATTTTAATCTGATGTCCAGAGGATTTGCTTCAAACTCAATAACCCCAAATTATGACGAAAAACTTCCACCAACAGTAGCAGCCATCACAAACCCCACATCTAAGATAGTGTATGATGAGCACAATCATGAGCGTTACCCACCTGGTGATCCAAGCAAACGAGCATTTGCATATTTTGTCTTGACAGGTGGGAGGTTTGTGTACGCATCCCTGATTCGGCTTCTGGTCCTCAAATTTGTTCTCAGCATGTCTGCCAGTAAAGACGTTCTTGCACTCGCCTCTATTGAGGTTGATCTTTCTAGCATCGAACCCGGAACCACTGTGACCGTTAAATGGCGTGGAAAACCCGTGTTTATCAGGCGCCGAACAGACGATGATGTGAAGCTGGCTAACAGTGTTGATGTGGCATCTCTTCGTGACCCGCAAGAGGATTCTGCCCGGGTCAAGAACCCTGAGTGGCTCATTGTGGTTGGTGTGTGCACCCATCTGGGTTGCATCCCGCTACCAAATGCTGGTGATTTTGGTGGGTGGTTTTGCCCGTGCCATGGTTCTCATTATGACATTTCAGGCAGAATCCGTAAGGGCCCTGCGCCTTACAACTTAGAGGTTCCTACTTACAGTTTCATGGATGAGAACAAGCTGCTCATCGGATGA 813 48.59 MLRAGSRRLLASLTSPWRHTNPASMTIISKNTQIEDAADYDLRSNHSSSLFNHHFNLMSRGFASNSITPNYDEKLPPTVAAITNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLVLKFVLSMSASKDVLALASIEVDLSSIEPGTTVTVKWRGKPVFIRRRTDDDVKLANSVDVASLRDPQEDSARVKNPEWLIVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFMDENKLLIG 270
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy3g03135 270 Gene3D - 139 270 IPR036922 GO:0051537(InterPro)
Pdy3g03135 270 SUPERFAMILY ISP transmembrane anchor 87 143 - -
Pdy3g03135 270 PRINTS Rieske 2Fe-2S subunit signature 208 219 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Pdy3g03135 270 PRINTS Rieske 2Fe-2S subunit signature 242 254 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Pdy3g03135 270 PRINTS Rieske 2Fe-2S subunit signature 230 242 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Pdy3g03135 270 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 200 268 IPR017941 GO:0051537(InterPro)
Pdy3g03135 270 NCBIfam ubiquinol-cytochrome c reductase iron-sulfur subunit 126 270 IPR006317 GO:0008121(InterPro)
Pdy3g03135 270 SUPERFAMILY ISP domain 132 268 IPR036922 GO:0051537(InterPro)
Pdy3g03135 270 FunFam Cytochrome b-c1 complex subunit Rieske, mitochondrial 140 270 - -
Pdy3g03135 270 Pfam Rieske [2Fe-2S] domain 200 255 IPR017941 GO:0051537(InterPro)
Pdy3g03135 270 Pfam Ubiquinol cytochrome reductase transmembrane region 102 141 IPR004192 GO:0008121(InterPro)
Pdy3g03135 270 CDD Rieske-cytochrome-bc1 147 270 - -
Pdy3g03135 270 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 74 270 IPR014349 GO:0005750(PANTHER)|GO:0006122(PANTHER)|GO:0016491(PANTHER)|GO:0051537(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy3g03135 K00411 ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr3:89205227 Pdy3g04077 Pdy-Chr3:103053007 wgd