AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00084 ATGGATAACAGGGCCCTAGCGGCGGCCCTACTTACGTCCGCCGTATCGGAGCTCCTCCTCCTCCTCTTTGTCGTCCCGCCTCCCGCCAGCGACTCCTTTCTGCCTCCGTACAACTCCCTTTCCCCTTTCGTCATCCAGTTCCTATCAATTTCACAAGCCGCCGCCCTCTCCCGTCTCTCCGGCAAACGAAAGCGATCCCGATCACCGGAGCCCGACGAACCTACCACCGAAACCATCCTATCAAAACTCCGCCGTCGCGTCGAAGAACCCGATTTCGCCATACCAACAAACCCAGACTCCTTCAATCTCTATTTCAATATGACTTCTTCAACGTTTGAGTGGCTGTCGTCCCTCCTCGAACCGCTGCTTGAGTGCCGTGACCCGGCCGACTCGCCCCTGAACCTCCCGGTCGAAATTCGGCTCGGTGTCGGCCTGTTTCGGCTCGCCACTGGTTCTGACTACGTCGAAATCGCTAGACGGTTCGAAGTCTCCGAACACGTGGCGAGATTCTGCGTGAACCAGCTGTGCCGGGTCCTTTGCACAGACTTCCGGTTCTGGGTCCGGTTTCCCACCCAAGTGGAGCTCGAACCCATCTCCCAATCATTCGAATCGCGAACCGGTTTACCCAATTGTTGTGGGGTTATACATTGTACGAGGTACAAGATTTCGAAACACAAAGCTATAGCAGCTCAAATCGTGGTCGATTCATCATCAAAGATTCTGAGCATTGTTGCAGGCTTCAATGCTGAAAAGGGTGATCAAATTGTTCTCAAATCATCAAGTTTGTACAAAGATATCGAGTCAAAAATCTTGTTAAACTCCCAACCTGTAGATATAGATGGTGTATCTATACCTCAATACTTGATTGGTGATCAAGGGTACCCTTGTCTTCCATGGTTAATGGTTCCATTTGATCAGCCTGTAATGAACTCTATTGAAGAAAACTTCAATTCTGCACATAATATGATGCTTGTTTCGGGTTTTAGAACTGTTGATAGTTTAAAGAAATGGGGTGCTTTGAGTAAGCAAATTGATGAAGAGATGAAGACTATGGTGGCTTACATTGGCGCATGTTCGATTCTTCATAATGCGTTACTTATGAGGGAAGATTATTCGTGTTTATCTGATAAATCTGATGAGTATAACGATAGCCAGAAACGGGTTGTGAATGCTAGTTTTGATGATGATTTTGTTGAGCAAAAGGGTTTTGAGATTAGAAGTGCATTGGCTAGAAGAGCAAGAAGATGTTTATAG 1254 47.37 MDNRALAAALLTSAVSELLLLLFVVPPPASDSFLPPYNSLSPFVIQFLSISQAAALSRLSGKRKRSRSPEPDEPTTETILSKLRRRVEEPDFAIPTNPDSFNLYFNMTSSTFEWLSSLLEPLLECRDPADSPLNLPVEIRLGVGLFRLATGSDYVEIARRFEVSEHVARFCVNQLCRVLCTDFRFWVRFPTQVELEPISQSFESRTGLPNCCGVIHCTRYKISKHKAIAAQIVVDSSSKILSIVAGFNAEKGDQIVLKSSSLYKDIESKILLNSQPVDIDGVSIPQYLIGDQGYPCLPWLMVPFDQPVMNSIEENFNSAHNMMLVSGFRTVDSLKKWGALSKQIDEEMKTMVAYIGACSILHNALLMREDYSCLSDKSDEYNDSQKRVVNASFDDDFVEQKGFEIRSALARRARRCL 417
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00084 417 PANTHER UNCHARACTERIZED 95 388 - -
Pdy4g00084 417 Pfam DDE superfamily endonuclease 218 363 IPR027806 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00084 K23222 nuclease HARBI1 [EC:3.1.-.-]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr4:1626771 Pdy4g02842 Pdy-Chr4:75735749 dispersed