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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00086 ATGCCTGGGAGCTTAGAACCGTTAGATGTTGGTGTTCAGATTCCGTATCATTTCAGGTGTCCGATTTCTCTTGAGCTCATGCGGGATCCGGTCATCGTCGGGACTGGTCAGACGTATGACCGCTCAAGCATCGAGTCATGGGTGGCTACCGGAAACACGACATGCCCGGTCACAAGGCTGCCTCTCACCGACTTCACGCTCATCCCGAACCACACGTTACGACGGCTCATCCAGGAATGGTGTGTGGCTAACCGGTCATTTGGCGTGGAGCGGATTCCCACACCGAAGCAACCGGCGGATCCGGTCATGGTCCGATCGTTGCTCAATCAGGCTGCCTCTGAGTCTAACTCTAGGCATGCCAGGCTGTCCGCGCTTCGTCGACTCCGCGGGCTGGCACGTGACTCTGATAAGAATCGTTCGGTGATCGCTACGCATAACGCACGTGAGGTGCTGCTTGGGGTGTTGTTCTCCCAAACGACGTCGTCCGAGTTGCATCTCGAGTCGCTCGCGCTTCTATCATCGTTTCAGCTTTCGGAAACCGAATGCCTTTTGGTATCATCGGATCCGGATCGGGTTTCGTACCTGATTTCGCTGCTTTCGCATTCGTCAATAGATGTGAGGGTGAATTCGGCGTCGTTGATTGAGAACGTTGTCGCCGGAACGAGATCGCCGGAAAACAGGGCGGAGATTAGTAGTCACGATGAGGTTTTTGACCGGATCGTTGGGATTCTGAATTATCCGTTATCGTATCCGCGAGCGATGAAAGTCGGAATCAAAGCGTTATTTGCTTTATGTCTGGTGAAGCAGCACCGTCACAAAGCGGTGGAGGCTGGAGCGGTGGCGGCGCTGATAGACAGGTTGGCGGATTTCGAAAAATGTGACGCCGAAAGAGCTCTGGCGACGGTGGAGCTTCTATGCCGGATACCGGAAGGATGCGCAGCCTTTGCGTCTCACGCGCTTACCGTGCCTCTGCTTGTGAAGATCATTCTCAAAATATCAGATCGAGCAACAGAGTACGCCGCCGGTGCGTTGTTGTCGCTGTGCGGCGGTGCTCCGGTTGCGGAACGATTGCAGAGGGAGGCGGTGTCTGCTGGGGTGTTAACACAGCTGTTGTTGCTTGTACAGAGCGATTGTACAGAGCGTGCAAAGCGAAAAGCGCAACTGCTGTTGAAATTGCTCCGGGATTCGTGGCCGGAAAAATCGGTTCGGAATTCTGATGATTTGGCGTGCAGCGACGTCGTTCCGTTTTGA 1251 54.52 MPGSLEPLDVGVQIPYHFRCPISLELMRDPVIVGTGQTYDRSSIESWVATGNTTCPVTRLPLTDFTLIPNHTLRRLIQEWCVANRSFGVERIPTPKQPADPVMVRSLLNQAASESNSRHARLSALRRLRGLARDSDKNRSVIATHNAREVLLGVLFSQTTSSELHLESLALLSSFQLSETECLLVSSDPDRVSYLISLLSHSSIDVRVNSASLIENVVAGTRSPENRAEISSHDEVFDRIVGILNYPLSYPRAMKVGIKALFALCLVKQHRHKAVEAGAVAALIDRLADFEKCDAERALATVELLCRIPEGCAAFASHALTVPLLVKIILKISDRATEYAAGALLSLCGGAPVAERLQREAVSAGVLTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPEKSVRNSDDLACSDVVPF 416
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00086 416 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 13 83 IPR013083 -
Pdy4g00086 416 Gene3D - 253 395 IPR011989 -
Pdy4g00086 416 CDD RING-Ubox-PUB 15 67 IPR045210 -
Pdy4g00086 416 PANTHER WDSAM1 PROTEIN 12 400 IPR045185 GO:0061630(InterPro)
Pdy4g00086 416 SMART Ubox-2 17 80 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Pdy4g00086 416 Pfam U-box domain 14 85 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Pdy4g00086 416 FunFam RING-type E3 ubiquitin transferase 8 90 - -
Pdy4g00086 416 SUPERFAMILY RING-U-box 11 88 - -
Pdy4g00086 416 Gene3D - 84 252 IPR011989 -
Pdy4g00086 416 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Pdy4g00086 416 SUPERFAMILY ARM repeat 104 393 IPR016024 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00086 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
132573 Pdy4g00086 Pdy7g01555
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr4:1673143 Pdy7g01555 Pdy-Chr7:57496353 dispersed
Pdy Pdy-Chr4:1673143 Pdy1g00173 Pdy-Chr1:3787995 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Pdy1g00173 ACH 6 406 U-box gene family AT2G35930 54.95 3.49e-155 442.0
Pdy1g00419 . 357 492 U-box gene family AT5G67530 39.865 5.21e-19 89.7
Pdy1g00420 . 384 627 U-box gene family AT3G46510 27.711 1.94e-17 80.9
Pdy1g00881 . 1 525 U-box gene family AT2G33340 72.505 0.0 791.0
Pdy1g01123 . 6 405 U-box gene family AT2G35930 33.649 1.54e-63 208.0
Pdy1g01947 . 353 495 U-box gene family AT5G67530 43.137 7.62e-29 110.0
Pdy1g02373 . 10 672 U-box gene family AT5G01830 55.572 0.0 731.0
Pdy1g02615 ACH 530 787 U-box gene family AT2G23140 26.82 2.97e-15 77.8
Pdy1g02818 . 236 423 U-box gene family AT2G33340 28.796 1.18e-14 75.5
Pdy1g02853 . 236 342 U-box gene family AT2G33340 33.036 4.44e-09 56.6
Pdy1g02864 ACH 1 460 U-box gene family AT3G07360 53.593 1.61e-172 491.0
Pdy1g02865 ACH 1 276 U-box gene family AT3G07370 63.929 3.98e-131 371.0
Pdy1g03519 . 53 660 U-box gene family AT5G42340 58.454 0.0 693.0
Pdy1g03591 ACH 353 491 U-box gene family AT5G67530 40.0 1.25e-25 102.0
Pdy1g03606 . 353 477 U-box gene family AT5G67530 49.265 5.92e-31 115.0
Pdy1g04182 ACH 9 94 U-box gene family AT3G07370 31.395 2.54e-06 46.6
Pdy1g04406 . 353 475 U-box gene family AT5G67530 47.015 3.63e-27 107.0
Pdy1g04787 . 4 809 U-box gene family AT1G76390 62.192 0.0 971.0
Pdy1g04872 . 242 569 U-box gene family AT1G23030 26.761 3.48e-20 94.7
Pdy1g05021 . 23 459 U-box gene family AT3G11840 38.803 1.55e-89 277.0
Pdy1g05035 . 23 462 U-box gene family AT3G11840 39.207 3.05e-91 281.0
Pdy1g05038 . 5 435 U-box gene family AT5G37490 42.921 2.28e-108 325.0
Pdy1g05078 . 230 1023 U-box gene family AT1G68940 47.81 0.0 751.0
Pdy1g05201 . 9 686 U-box gene family AT1G60190 43.994 0.0 553.0
Pdy1g05315 ACH 1 769 U-box gene family AT1G24330 63.063 0.0 960.0
Pdy1g05524 . 364 526 U-box gene family AT2G28830 30.539 4.86e-09 58.2
Pdy1g05551 ACH 23 623 U-box gene family AT1G71020 61.803 0.0 693.0
Pdy2g00819 . 106 807 U-box gene family AT1G76390 27.169 7.69e-48 181.0
Pdy2g00900 . 25 797 U-box gene family AT1G20780 27.411 4.03e-57 210.0
Pdy2g01426 . 405 717 U-box gene family AT1G27910 26.899 1.55e-19 89.4
Pdy2g01733 . 527 818 U-box gene family AT2G23140 24.59 5.41e-13 70.1
Pdy2g01938 . 475 823 U-box gene family AT2G23140 44.875 3.39e-82 269.0
Pdy2g03307 ACH 366 621 U-box gene family AT3G46510 24.138 2.93e-09 57.8
Pdy2g03689 ACH 10 410 U-box gene family AT2G35930 54.785 4.79e-153 437.0
Pdy2g03817 . 346 496 U-box gene family AT5G67530 47.02 3.43e-41 156.0
Pdy2g04095 ACH 325 422 U-box gene family AT2G33340 36.634 1.45e-08 55.1
Pdy3g00187 . 7 405 U-box gene family AT2G35930 33.252 2.64e-68 221.0
Pdy3g00249 . 1 415 U-box gene family AT3G18710 42.654 9.36e-108 322.0
Pdy3g00711 . 22 182 U-box gene family AT5G65500 30.864 1.01e-14 71.6
Pdy3g00757 . 1 667 U-box gene family AT1G60190 41.42 4.63e-173 509.0
Pdy3g01133 . 9 107 U-box gene family AT3G07370 30.0 3.75e-08 52.4
Pdy3g01212 ACH 495 827 U-box gene family AT2G23140 47.006 7.07e-84 269.0
Pdy3g01535 ACH 366 621 U-box gene family AT3G46510 24.138 6.27e-09 56.6
Pdy3g01665 . 210 430 U-box gene family AT2G33340 25.306 2.26e-12 67.0
Pdy3g01806 . 236 470 U-box gene family AT2G33340 30.242 4.52e-19 89.7
Pdy3g02010 . 308 423 U-box gene family AT2G33340 29.661 1.11e-08 55.8
Pdy3g02609 ACH 585 819 U-box gene family AT2G23140 36.515 2.38e-37 141.0
Pdy3g02678 . 1 595 U-box gene family AT5G67530 75.874 0.0 911.0
Pdy3g03021 . 262 501 U-box gene family AT2G33340 22.745 4.14e-08 53.9
Pdy3g03388 ACH 23 624 U-box gene family AT1G71020 55.628 0.0 596.0
Pdy3g03517 . 346 492 U-box gene family AT5G67530 29.375 8.38e-12 62.4
Pdy3g03675 ACH 353 494 U-box gene family AT5G67530 41.176 2.86e-28 110.0
Pdy3g04098 . 353 494 U-box gene family AT5G67530 48.63 8.36e-36 132.0
Pdy3g04134 ACH 1 768 U-box gene family AT1G27910 59.948 0.0 906.0
Pdy3g04397 . 448 729 U-box gene family AT1G24330 27.986 2.86e-25 107.0
Pdy4g00086 ACH 1 421 U-box gene family AT1G49780 65.094 0.0 531.0
Pdy4g00118 . 352 491 U-box gene family AT5G67530 42.763 8.47e-30 118.0
Pdy4g00437 ACH 483 749 U-box gene family AT3G54790 37.184 8.59e-33 127.0
Pdy4g00561 ACH 11 101 U-box gene family AT3G07370 40.659 3.89e-10 59.7
Pdy4g01081 . 387 624 U-box gene family AT3G46510 28.216 1.57e-08 55.1
Pdy4g02651 . 266 508 U-box gene family AT1G04510 26.515 1.38e-07 52.0
Pdy4g02868 ACH 2 635 U-box gene family AT3G46510 66.823 0.0 842.0
Pdy4g02875 . 45 830 U-box gene family AT2G45910 35.697 2.21e-155 472.0
Pdy4g03264 . 259 459 U-box gene family AT2G33340 26.697 1.29e-08 56.6
Pdy4g03394 ACH 237 465 U-box gene family AT2G33340 25.475 2.69e-13 68.9
Pdy4g03442 . 829 960 U-box gene family AT2G28830 54.676 9.55e-36 131.0
Pdy4g03670 . 345 496 U-box gene family AT5G67530 26.974 2.34e-15 72.8
Pdy4g03740 . 6 405 U-box gene family AT2G35930 33.252 1.38e-70 227.0
Pdy4g03865 ACH 490 747 U-box gene family AT3G54790 26.966 1.35e-15 78.2
Pdy4g04042 . 577 822 U-box gene family AT2G23140 31.418 2.53e-18 88.6
Pdy4g04162 . 334 607 U-box gene family AT1G23030 34.028 1.11e-33 128.0
Pdy4g04261 . 1 726 U-box gene family AT1G29340 64.189 0.0 851.0
Pdy4g04445 . 6 371 U-box gene family AT4G21350 60.054 3.77e-141 404.0
Pdy5g00344 ACH 344 496 U-box gene family AT1G71020 32.258 1.49e-15 77.8
Pdy5g00429 . 237 524 U-box gene family AT2G33340 32.765 6.87e-38 145.0
Pdy5g02247 ACH 546 782 U-box gene family AT2G23140 26.05 1.18e-13 72.8
Pdy5g02306 . 357 477 U-box gene family AT5G67530 50.376 4.53e-32 129.0
Pdy5g02374 . 33 707 U-box gene family AT5G67340 39.799 1.21e-149 450.0
Pdy5g02490 ACH 1 460 U-box gene family AT3G07360 56.907 0.0 530.0
Pdy5g02491 ACH 10 276 U-box gene family AT3G07370 64.419 2.08e-127 361.0
Pdy5g03009 ACH 5 635 U-box gene family AT3G46510 66.822 0.0 843.0
Pdy5g03115 . 353 475 U-box gene family AT5G67530 46.269 4.77e-28 108.0
Pdy6g00138 . 4 811 U-box gene family AT1G76390 61.916 0.0 957.0
Pdy6g00250 . 353 480 U-box gene family AT5G67530 49.64 2.21e-33 122.0
Pdy6g00519 . 25 797 U-box gene family AT1G20780 28.48 2.10e-57 211.0
Pdy6g00720 . 43 832 U-box gene family AT2G45910 41.288 0.0 581.0
Pdy6g01600 ACH 559 711 U-box gene family AT2G23140 35.484 2.12e-10 64.3
Pdy6g01908 . 627 755 U-box gene family AT2G23140 28.788 3.11e-07 52.0
Pdy6g01909 . 636 762 U-box gene family AT2G23140 28.462 6.75e-07 50.8
Pdy6g02022 . 455 706 U-box gene family AT1G24330 33.206 6.41e-24 100.0
Pdy6g02100 . 30 535 U-box gene family AT5G40140 50.484 6.03e-158 457.0
Pdy6g02201 . 2 1030 U-box gene family AT5G15400 73.649 0.0 1586.0
Pdy6g02358 . 352 493 U-box gene family AT5G67530 45.455 8.40e-33 127.0
Pdy6g02464 ACH 4 829 U-box gene family AT2G23140 58.703 0.0 906.0
Pdy6g02504 ACH 1 448 U-box gene family AT3G49810 70.133 0.0 618.0
Pdy6g02580 ACH 563 819 U-box gene family AT2G23140 35.741 3.04e-39 147.0
Pdy6g02773 . 655 755 U-box gene family AT3G54790 33.333 1.14e-08 58.5
Pdy6g02847 ACH 501 827 U-box gene family AT2G23140 46.364 1.12e-81 263.0
Pdy6g03142 . 5 227 U-box gene family AT1G24330 40.179 3.54e-40 155.0
Pdy6g03250 . 1 556 U-box gene family AT5G65200 49.11 3.62e-166 481.0
Pdy6g03377 . 237 434 U-box gene family AT2G33340 25.0 4.37e-10 59.7
Pdy6g03444 ACH 334 509 U-box gene family AT1G23030 28.492 8.08e-15 75.5
Pdy6g03833 ACH 734 805 U-box gene family AT2G28830 42.308 1.14e-14 75.5
Pdy7g00955 . 847 953 U-box gene family AT2G28830 68.807 3.51e-45 154.0
Pdy7g00971 . 353 477 U-box gene family AT5G67530 49.265 2.63e-31 116.0
Pdy7g01149 . 591 759 U-box gene family AT2G23140 26.136 2.49e-06 48.5
Pdy7g01555 ACH 1 421 U-box gene family AT1G49780 63.895 0.0 529.0
Pdy7g01619 . 209 511 U-box gene family AT2G33340 23.599 6.38e-12 65.1
Pdy7g01968 ACH 734 805 U-box gene family AT2G28830 46.154 9.48e-17 82.0
Pdy7g02223 ACH 12 191 U-box gene family AT3G07370 28.889 8.64e-08 52.4
Pdy7g02325 ACH 291 393 U-box gene family AT5G42340 40.0 4.28e-18 87.4
Pdy7g02618 . 603 809 U-box gene family AT2G23140 25.238 8.07e-13 69.3
Pdy8g00101 ACH 53 660 U-box gene family AT5G42340 53.595 0.0 641.0
Pdy8g00988 . 7 406 U-box gene family AT2G35930 41.505 1.49e-109 327.0
Pdy8g01029 . 6 410 U-box gene family AT2G35930 48.411 1.42e-144 416.0
Pdy8g01326 ACH 7 410 U-box gene family AT2G35930 55.419 1.19e-155 443.0
Pdy8g01360 . 346 497 U-box gene family AT5G67530 50.0 2.22e-51 171.0
Pdy8g01642 ACH 440 696 U-box gene family AT5G67340 26.367 2.77e-10 63.9
Pdy8g01679 . 1 435 U-box gene family AT5G37490 46.067 1.58e-128 377.0
Pdy8g01729 . 19 787 U-box gene family AT5G65500 43.789 0.0 642.0
Pdy8g01951 . 10 672 U-box gene family AT4G36550 37.266 1.90e-120 375.0
Pdy8g02056 ACH 1 448 U-box gene family AT3G49810 69.643 0.0 610.0
Pdy8g02094 ACH 4 829 U-box gene family AT2G23140 53.986 0.0 781.0
Pdy8g02571 . 274 496 U-box gene family AT5G42340 29.515 5.54e-14 74.7
Pdy8g02891 . 10 626 U-box gene family AT3G54850 64.182 0.0 771.0
Pdy8g03182 . 10 633 U-box gene family AT3G46510 38.473 2.78e-127 390.0
Pdy8g03295 . 22 835 U-box gene family AT4G25160 52.561 0.0 823.0
Pdy8g03407 ACH 9 94 U-box gene family AT3G07370 31.395 4.56e-08 52.0
Pdy9g00175 ACH 230 535 U-box gene family AT1G71020 25.893 6.35e-18 87.4
Pdy9g00539 . 10 410 U-box gene family AT2G35930 54.676 3.27e-160 456.0
Pdy9g01304 . 1 81 U-box gene family AT3G07370 35.802 1.57e-09 57.0
Pdy9g01584 . 217 414 U-box gene family AT2G33340 24.651 8.28e-07 48.5
Pdy9g01817 ACH 479 749 U-box gene family AT3G54790 38.516 2.30e-33 129.0
Pdy9g02164 . 350 501 U-box gene family AT5G67530 41.25 5.06e-32 128.0
Pdy9g02397 . 237 449 U-box gene family AT2G33340 26.991 3.33e-07 53.5
Pdy9g02517 . 446 712 U-box gene family AT1G67530 27.24 4.22e-23 101.0
Pdy9g03102 . 26 766 U-box gene family AT1G76390 27.333 9.40e-37 147.0
Pdy9g03138 . 560 742 U-box gene family AT2G23140 36.508 3.14e-20 94.7
Pdy9g03191 . 346 500 U-box gene family AT5G67530 54.839 4.65e-57 186.0
Pdy9g03219 ACH 544 813 U-box gene family AT2G23140 25.623 1.06e-13 72.4
Pdy9g03251 . 44 205 U-box gene family AT2G45910 50.0 2.63e-50 171.0
Pdy9g03252 . 1 832 U-box gene family AT2G45910 49.22 0.0 825.0