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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00091 ATGGCGAATGCATCTTCTTCTTCTTGTGCTTACTCCCTTTTACCTCAACCTATTTCCCCCAATCGCCATTTGCCATTTAGATCTTCATTGTTTGCTTCATCTTTGCAGATTAATAATGGCTTCTCTTTCCGCCCTCTCAAGAAAACACCCTCTCTTCGAGTCCTCTCTATGCGACGTTCATCGAAAGCAACCTTGGTGACCGGGCAGTCGTGGAACACATCAGTTCTCGACAGCAAAACCCCAGTACTGGTCGAGTTCTACGCCAGTTGGTGCGGGCCATGCCAGATGGTGCACCGTGTGATTGACGAGATTGCAGCCGAGTATGCCGGGCGGGTCAAGTGTTTTGTGCTGAATGCTGACCAAGAACCACTAATAACAGAAGAATATGATGTCAAAGCCGTGCCCATTGTGCTTGTGTTCAACAACGGTGAGAAATGCGAGTCGGTGGTTGGAACCATGCCTAAAGAGTTCTATGTGGCTGCCATTGAAAGGGTCTTGTCATCTTCATCTTGA 513 48.15 MANASSSSCAYSLLPQPISPNRHLPFRSSLFASSLQINNGFSFRPLKKTPSLRVLSMRRSSKATLVTGQSWNTSVLDSKTPVLVEFYASWCGPCQMVHRVIDEIAAEYAGRVKCFVLNADQEPLITEEYDVKAVPIVLVFNNGEKCESVVGTMPKEFYVAAIERVLSSSS 170
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00091 170 Gene3D Glutaredoxin 64 169 - -
Pdy4g00091 170 ProSiteProfiles Thioredoxin domain profile. 52 167 IPR013766 -
Pdy4g00091 170 Pfam Thioredoxin 65 162 IPR013766 -
Pdy4g00091 170 CDD TRX-family 74 163 - -
Pdy4g00091 170 ProSitePatterns Thioredoxin family active site. 83 101 IPR017937 -
Pdy4g00091 170 PANTHER GEO12009P1 57 166 - GO:0005737(PANTHER)|GO:0015035(PANTHER)
Pdy4g00091 170 FunFam Thioredoxin 57 169 - -
Pdy4g00091 170 SUPERFAMILY Thioredoxin-like 54 167 IPR036249 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00091 K03671 thioredoxin
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Event-related genes

Select Gene_1 Gene_2 Event_name
132575 Pdy4g00091 Pdy7g01557
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr4:1751880 Pdy4g00621 Pdy-Chr4:11362371 dispersed
Pdy Pdy-Chr4:1751880 Pdy7g01557 Pdy-Chr7:57519466 wgd