AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pdy4g00106 | ATGGCGATTGATCCTCAGCCTACACTCACTAAGAAGAAACCTTTATCTTCCAAGTGGAAACAGACAAAGGCAATGGTGATTCAGAAACGATTACCACAGAGAAAAGCTACGAATCCTAAGCAGAGGGTGAATTTTGATCTTCCACAAAACTCAATAATAAGTTATGACCCGAAATCGAGTGCTTCAGTTCAACCTCCTGATTACCAAGCCAAGTCTGCTGCTATAAAGCGAGCCGATGAGGTTCAAGCAAGCCTAAATTCCAAGTTACCGAGTTTTATAAAGTCTATGCTCCCATCACATGTTAGCAGTTGCTTTTGGCTGGGGCTTCCCAAGAAGTTCTGTGATGATCATATGCCCAAACAGGATGAAATGGTTGTGTTGGCGAATGAAGATGAACAAGAATTCAAAACCAAGTTTCTTGTTCATAAAACGGGATTGAGTGGTGGCTGGCGAGGGTTTTCGAATGCTCACAGATTGGTTGAGGGAGATGCTCTAGTTTTTCAGTTGATTGAGCAATGGAAATTTAAGGTTTACATTGTAAGGGTAAATGGTCAAAATGAAATTGATGGAGCTCTTGGCCTTTTAAACTTAGTTCCTAGTGGCATGAATGTCAACCGATGTCAAGACAAAAGGGACTCAAGGAATCCAGATAGAGTTGAAGATATGGATATCGATTTACATCAAGATAATGCTCAAGAGAAGGGTTTAGTGGTGTTTGATCAATCAGGAGAGGGTAGTGAGAACTCAGATTCAGCAGTTTCTGAAGGACTCAGATTCTCACAATCTGTTCTTGAGTTCAAGGATATTAAGGATTACAATGATTTTAATATTGTTGTGGATGATTTGGTCATAGATTCTGAAATACCAAAACATTTCCAAATCAAATACTATGATTTATGTCAAAGTCAAAACACATATCTTCATGAAAACCTCATCAAGGGCCTCAATGTTCAACTTGCTGTGGGGATAATTCTTGAAACCATTACAATCTCTGACGCAATCAAAGCTTGTAAAATGACTGTCACCTGTGATGATTTTGAAACATGGGATAAGACCCTTAAGGCTTTTGAAGAGGTGGGCATGAAAGTCGGGTTTTTAAGAGCCCGGATCAGTAAGCTCAGGGGCCTATTGTTTGAATCAAAGATGTTGTTGGAGGCTAAGAGAAATGAACAAGCGAAAGCCAATGAGGAAATGAGAGTGATCAGTGAGAAGCTTTGTAGGGTAAGAGATGTGATCAAGAATCTTGATGATGAGATTGAATCTTTGAATATGAAAGGCAAGGAACATGAGCTGGTTTTTTATAAGGAGGTTAAGGCACCTTGGTGA | 1326 | 39.67 | MAIDPQPTLTKKKPLSSKWKQTKAMVIQKRLPQRKATNPKQRVNFDLPQNSIISYDPKSSASVQPPDYQAKSAAIKRADEVQASLNSKLPSFIKSMLPSHVSSCFWLGLPKKFCDDHMPKQDEMVVLANEDEQEFKTKFLVHKTGLSGGWRGFSNAHRLVEGDALVFQLIEQWKFKVYIVRVNGQNEIDGALGLLNLVPSGMNVNRCQDKRDSRNPDRVEDMDIDLHQDNAQEKGLVVFDQSGEGSENSDSAVSEGLRFSQSVLEFKDIKDYNDFNIVVDDLVIDSEIPKHFQIKYYDLCQSQNTYLHENLIKGLNVQLAVGIILETITISDAIKACKMTVTCDDFETWDKTLKAFEEVGMKVGFLRARISKLRGLLFESKMLLEAKRNEQAKANEEMRVISEKLCRVRDVIKNLDDEIESLNMKGKEHELVFYKEVKAPW | 441 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pdy4g00106 | 441 | CDD | B3-DNA | 90 | 181 | IPR003340 | GO:0003677(InterPro) | |
| Pdy4g00106 | 441 | Coils | Coil | 412 | 432 | - | - | |
| Pdy4g00106 | 441 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED | 10 | 183 | IPR044837 | - | |
| Pdy4g00106 | 441 | Coils | Coil | 384 | 404 | - | - | |
| Pdy4g00106 | 441 | ProSiteProfiles | B3 DNA-binding domain profile. | 92 | 183 | IPR003340 | GO:0003677(InterPro) | |
| Pdy4g00106 | 441 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Pdy4g00106 | 441 | SMART | B3-2 | 92 | 183 | IPR003340 | GO:0003677(InterPro) | |
| Pdy4g00106 | 441 | Pfam | B3 DNA binding domain | 92 | 181 | IPR003340 | GO:0003677(InterPro) | |
| Pdy4g00106 | 441 | Gene3D | - | 69 | 184 | IPR015300 | - | |
| Pdy4g00106 | 441 | SUPERFAMILY | DNA-binding pseudobarrel domain | 85 | 183 | IPR015300 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pdy4g00106 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 132581 | Pdy4g00106 | Pdy7g01566 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Pdy | Pdy-Chr4:1892280 | Pdy6g02388 | Pdy-Chr6:63266391 | dispersed | |
| Pdy | Pdy-Chr4:1871740 | Pdy4g00106 | Pdy-Chr4:1892280 | proximal | |
| Pdy | Pdy-Chr4:1892280 | Pdy4g00107 | Pdy-Chr4:1896330 | tandem | |
| Pdy | Pdy-Chr4:1892280 | Pdy5g00719 | Pdy-Chr5:11655275 | wgd | |
| Pdy | Pdy-Chr4:1892280 | Pdy6g02384 | Pdy-Chr6:63184408 | wgd | |
| Pdy | Pdy-Chr4:1892280 | Pdy7g01566 | Pdy-Chr7:57717628 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Pdy1g02949 | ACH | 4 | 769 | B3 DNA Binding Superfamily | AT2G30470 | 42.805 | 0.0 | 598.0 | |
| Pdy1g04598 | ACH | 1 | 668 | B3 DNA Binding Superfamily | AT4G30080 | 54.971 | 0.0 | 669.0 | |
| Pdy2g02921 | ACH | 13 | 591 | B3 DNA Binding Superfamily | AT2G46530 | 60.269 | 0.0 | 681.0 | |
| Pdy2g03573 | . | 12 | 669 | B3 DNA Binding Superfamily | AT4G30080 | 56.268 | 0.0 | 695.0 | |
| Pdy2g03903 | . | 2 | 693 | B3 DNA Binding Superfamily | AT2G28350 | 55.43 | 0.0 | 691.0 | |
| Pdy2g03925 | ACH | 62 | 772 | B3 DNA Binding Superfamily | AT5G60450 | 55.677 | 0.0 | 736.0 | |
| Pdy3g00496 | ACH | 251 | 387 | B3 DNA Binding Superfamily | AT4G32010 | 42.029 | 2.12e-30 | 117.0 | |
| Pdy3g00594 | ACH | 1 | 850 | B3 DNA Binding Superfamily | AT5G62000 | 59.977 | 0.0 | 993.0 | |
| Pdy3g02318 | ACH | 1 | 802 | B3 DNA Binding Superfamily | AT5G37020 | 65.428 | 0.0 | 961.0 | |
| Pdy3g02748 | ACH | 109 | 222 | B3 DNA Binding Superfamily | AT3G19184 | 48.246 | 1.27e-31 | 120.0 | |
| Pdy3g03025 | . | 178 | 289 | B3 DNA Binding Superfamily | AT1G05930 | 32.5 | 3.74e-12 | 63.2 | |
| Pdy3g03125 | . | 45 | 313 | B3 DNA Binding Superfamily | AT3G26790 | 44.364 | 8.78e-60 | 192.0 | |
| Pdy3g04685 | ACH | 1 | 616 | B3 DNA Binding Superfamily | AT4G23980 | 57.727 | 0.0 | 687.0 | |
| Pdy4g00103 | . | 43 | 199 | B3 DNA Binding Superfamily | AT5G42700 | 38.65 | 6.16e-29 | 109.0 | |
| Pdy4g00106 | ACH | 108 | 230 | B3 DNA Binding Superfamily | AT3G19184 | 53.659 | 5.71e-40 | 142.0 | |
| Pdy4g00107 | ACH | 112 | 249 | B3 DNA Binding Superfamily | AT3G19184 | 52.899 | 1.78e-43 | 152.0 | |
| Pdy4g00957 | . | 2 | 111 | B3 DNA Binding Superfamily | AT5G66980 | 38.053 | 9.63e-20 | 81.3 | |
| Pdy4g01473 | . | 3 | 664 | B3 DNA Binding Superfamily | AT1G59750 | 65.766 | 0.0 | 843.0 | |
| Pdy4g04226 | . | 1 | 797 | B3 DNA Binding Superfamily | AT5G37020 | 58.789 | 0.0 | 855.0 | |
| Pdy4g04328 | . | 1 | 587 | B3 DNA Binding Superfamily | AT2G33860 | 50.245 | 0.0 | 548.0 | |
| Pdy4g04412 | . | 15 | 660 | B3 DNA Binding Superfamily | AT4G21550 | 36.179 | 1.37e-121 | 379.0 | |
| Pdy5g00336 | ACH | 1 | 855 | B3 DNA Binding Superfamily | AT5G62000 | 58.891 | 0.0 | 961.0 | |
| Pdy5g00719 | . | 1 | 240 | B3 DNA Binding Superfamily | AT3G19184 | 53.629 | 2.73e-75 | 228.0 | |
| Pdy5g01954 | . | 8 | 749 | B3 DNA Binding Superfamily | AT4G32010 | 49.509 | 0.0 | 716.0 | |
| Pdy5g02429 | . | 12 | 719 | B3 DNA Binding Superfamily | AT3G24650 | 42.727 | 8.09e-143 | 434.0 | |
| Pdy5g02567 | . | 4 | 218 | B3 DNA Binding Superfamily | AT5G58280 | 54.222 | 2.16e-71 | 220.0 | |
| Pdy5g02585 | ACH | 1 | 672 | B3 DNA Binding Superfamily | AT4G32010 | 49.379 | 0.0 | 666.0 | |
| Pdy6g00170 | ACH | 32 | 463 | B3 DNA Binding Superfamily | AT1G19850 | 72.874 | 0.0 | 650.0 | |
| Pdy6g01085 | ACH | 1 | 576 | B3 DNA Binding Superfamily | AT4G30080 | 55.426 | 0.0 | 578.0 | |
| Pdy6g02384 | . | 115 | 236 | B3 DNA Binding Superfamily | AT3G19184 | 50.0 | 2.57e-38 | 139.0 | |
| Pdy6g02388 | ACH | 115 | 236 | B3 DNA Binding Superfamily | AT3G19184 | 48.361 | 2.22e-37 | 137.0 | |
| Pdy6g03153 | . | 20 | 187 | B3 DNA Binding Superfamily | AT4G01580 | 25.862 | 1.45e-14 | 70.5 | |
| Pdy7g01566 | ACH | 5 | 227 | B3 DNA Binding Superfamily | AT3G19184 | 60.619 | 3.70e-86 | 255.0 | |
| Pdy7g01567 | ACH | 102 | 219 | B3 DNA Binding Superfamily | AT3G19184 | 41.525 | 3.80e-30 | 112.0 | |
| Pdy7g01837 | . | 5 | 490 | B3 DNA Binding Superfamily | AT1G19220 | 67.409 | 0.0 | 645.0 | |
| Pdy8g00108 | . | 170 | 289 | B3 DNA Binding Superfamily | AT1G05930 | 35.156 | 1.23e-15 | 72.4 | |
| Pdy8g01800 | ACH | 1 | 794 | B3 DNA Binding Superfamily | AT5G37020 | 66.017 | 0.0 | 1022.0 | |
| Pdy8g02531 | ACH | 62 | 772 | B3 DNA Binding Superfamily | AT5G60450 | 54.101 | 0.0 | 749.0 | |
| Pdy8g02911 | ACH | 1 | 662 | B3 DNA Binding Superfamily | AT4G30080 | 57.544 | 0.0 | 715.0 | |
| Pdy9g00035 | . | 1 | 470 | B3 DNA Binding Superfamily | AT5G20730 | 76.907 | 0.0 | 715.0 | |
| Pdy9g01983 | ACH | 33 | 126 | B3 DNA Binding Superfamily | AT4G21550 | 45.263 | 2.61e-22 | 93.6 | |
| Pdy9g02640 | ACH | 1 | 616 | B3 DNA Binding Superfamily | AT4G23980 | 57.864 | 0.0 | 687.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Pdy | B3 | 5e-16 | CL0405 | TF | B3 |