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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00110 ATGATCGAAGAAACAGCCACCAGCGGATGCGAAATTACTACTCCCATTCCAACGATGAAGGTTTCAAATTCACACGGAATTGTTAGCCGGAGTAGAGATACAGATTTCACCACCTCCGGTATTACCTCTGCCACCGGTAAGAGAAGAAGATTATGTTCTCATGATCACGTGAATGTTTCTCTTCTTCAGTATGACTCTGACGCTGACGTGATTTTGGAGAAGAATGTTGTTCCCACGGCGATTTCCGGCACCTCCGATCATGTTAATACTTCGTCTACATGCTCTGTGAATGACGATTCGAGCTCAGATCTGAAGGCTGAATGTCTTTCTCAGAAAGAGATCTTCATCTCTGGTAACGACCGTTTCAGAGATACAAGCGCCTCAAGTGCGGTTTGCTTGGAATCGGAAGAAATTGAGACGTTATCGATGGCGACACCGGAGAATGAGGCTACTTCCGGTTGTAAACCACCATCACCACCGGCGGCGAAGAGTCCTTCTGCTGCGGAACTTGAAGAATTTTTCGTCAAAGCAGAAAAGTACGAGCAGAAACGATTCGCAGAAAAGTACAATTATGATATTGTGAAAGACGTTCCGATGGAAGGAAGGTACCAATGGATTCTGTTAAAGCCCTAA 633 45.34 MIEETATSGCEITTPIPTMKVSNSHGIVSRSRDTDFTTSGITSATGKRRRLCSHDHVNVSLLQYDSDADVILEKNVVPTAISGTSDHVNTSSTCSVNDDSSSDLKAECLSQKEIFISGNDRFRDTSASSAVCLESEEIETLSMATPENEATSGCKPPSPPAAKSPSAAELEEFFVKAEKYEQKRFAEKYNYDIVKDVPMEGRYQWILLKP 210
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00110 210 Pfam Cyclin-dependent kinase inhibitor 165 205 IPR003175 GO:0004861(InterPro)|GO:0005634(InterPro)|GO:0051726(InterPro)
Pdy4g00110 210 Gene3D p27 162 210 IPR044898 -
Pdy4g00110 210 MobiDBLite consensus disorder prediction 142 167 - -
Pdy4g00110 210 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 4-RELATED 49 209 IPR044275 GO:0004861(InterPro)|GO:0045736(InterPro)|GO:0051726(InterPro)
Pdy4g00110 210 PIRSF CKI-KRP-plant 7 210 IPR044275 GO:0004861(InterPro)|GO:0045736(InterPro)|GO:0051726(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00110 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
132583 Pdy4g00110 Pdy7g01570
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr4:1933357 Pdy6g02386 Pdy-Chr6:63246309 dispersed
Pdy Pdy-Chr3:82948711 Pdy4g00110 Pdy-Chr4:1933357 wgd
Pdy Pdy-Chr4:1933357 Pdy7g01570 Pdy-Chr7:57772952 wgd
Pdy Pdy-Chr4:1933357 Pdy8g02141 Pdy-Chr8:56326170 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Pdy1g00037 ACH 1 83 Core Cell Cycle gene family AT2G27960 95.181 2.10e-57 169.0
Pdy1g00247 . 14 304 Core Cell Cycle gene family AT1G76540 26.316 1.97e-28 112.0
Pdy1g00651 . 1 52 Core Cell Cycle gene family AT2G27960 82.692 7.17e-28 95.1
Pdy1g02026 . 10 290 Core Cell Cycle gene family AT3G48750 35.739 5.26e-57 186.0
Pdy1g02116 . 3 296 Core Cell Cycle gene family AT4G03270 41.0 2.47e-59 189.0
Pdy1g02426 . 2 309 Core Cell Cycle gene family AT3G54180 83.766 0.0 535.0
Pdy1g02823 ACH 1 221 Core Cell Cycle gene family AT5G48820 42.857 2.87e-45 148.0
Pdy1g02849 . 99 273 Core Cell Cycle gene family AT5G27620 27.568 2.44e-10 58.2
Pdy1g03411 . 1 436 Core Cell Cycle gene family AT5G06150 52.609 6.90e-150 432.0
Pdy1g03434 . 3 264 Core Cell Cycle gene family AT5G02110 29.455 2.13e-30 117.0
Pdy1g04764 . 11 315 Core Cell Cycle gene family AT1G20930 85.902 0.0 550.0
Pdy1g04767 . 11 315 Core Cell Cycle gene family AT1G20930 86.23 0.0 560.0
Pdy1g05126 . 115 302 Core Cell Cycle gene family AT3G54180 27.7 1.01e-12 67.4
Pdy1g05308 . 17 371 Core Cell Cycle gene family AT5G64960 45.33 4.64e-96 307.0
Pdy2g00354 . 12 300 Core Cell Cycle gene family AT1G70210 61.695 8.35e-124 355.0
Pdy2g00609 . 200 361 Core Cell Cycle gene family AT5G11300 35.542 1.18e-21 96.3
Pdy2g01025 . 1 294 Core Cell Cycle gene family AT3G48750 86.054 0.0 535.0
Pdy2g02356 . 18 367 Core Cell Cycle gene family AT5G10270 49.432 1.61e-112 345.0
Pdy2g02647 . 1 294 Core Cell Cycle gene family AT3G48750 37.584 1.57e-67 216.0
Pdy2g02833 . 12 434 Core Cell Cycle gene family AT5G11300 51.183 6.22e-153 440.0
Pdy2g02857 . 14 308 Core Cell Cycle gene family AT1G76540 26.163 6.67e-30 115.0
Pdy2g03863 ACH 1 80 Core Cell Cycle gene family AT2G27970 92.683 2.33e-53 159.0
Pdy2g04142 ACH 1 220 Core Cell Cycle gene family AT5G48820 44.398 2.86e-44 146.0
Pdy3g00075 . 42 302 Core Cell Cycle gene family AT5G65420 47.955 2.55e-75 233.0
Pdy3g00605 . 18 366 Core Cell Cycle gene family AT5G10270 51.714 7.10e-117 354.0
Pdy3g00871 . 18 379 Core Cell Cycle gene family AT5G10270 45.676 1.72e-105 328.0
Pdy3g01206 . 15 318 Core Cell Cycle gene family AT4G37630 31.068 2.72e-38 135.0
Pdy3g01340 . 1 459 Core Cell Cycle gene family AT1G44110 57.661 0.0 544.0
Pdy3g02347 . 35 429 Core Cell Cycle gene family AT1G20610 57.107 2.48e-155 444.0
Pdy3g02713 ACH 64 364 Core Cell Cycle gene family AT5G67260 47.923 1.35e-87 267.0
Pdy3g02750 ACH 150 192 Core Cell Cycle gene family AT1G49620 62.791 9.02e-14 64.7
Pdy3g02903 . 26 367 Core Cell Cycle gene family AT5G10270 47.953 8.83e-110 337.0
Pdy3g03889 . 18 366 Core Cell Cycle gene family AT5G10270 50.143 1.18e-115 353.0
Pdy3g04069 . 1 1002 Core Cell Cycle gene family AT3G12280 67.257 0.0 1363.0
Pdy3g04139 . 21 368 Core Cell Cycle gene family AT5G64960 43.733 1.17e-90 291.0
Pdy3g04296 . 12 433 Core Cell Cycle gene family AT5G11300 45.679 6.55e-133 390.0
Pdy3g04332 . 18 363 Core Cell Cycle gene family AT5G10270 51.585 2.76e-118 358.0
Pdy4g00076 . 14 282 Core Cell Cycle gene family AT4G34160 51.786 1.03e-98 295.0
Pdy4g00110 ACH 90 195 Core Cell Cycle gene family AT1G49620 46.364 3.44e-22 87.8
Pdy4g00613 . 18 370 Core Cell Cycle gene family AT5G10270 52.825 5.90e-120 366.0
Pdy4g02796 . 1 317 Core Cell Cycle gene family AT5G27620 60.188 9.09e-137 389.0
Pdy4g03032 ACH 1 222 Core Cell Cycle gene family AT5G48820 42.149 5.51e-47 153.0
Pdy4g03063 . 99 273 Core Cell Cycle gene family AT5G27620 26.486 1.12e-11 62.0
Pdy4g03590 . 7 497 Core Cell Cycle gene family AT1G02970 57.341 0.0 550.0
Pdy4g03876 . 20 307 Core Cell Cycle gene family AT1G76540 35.172 3.57e-57 189.0
Pdy4g04273 . 10 290 Core Cell Cycle gene family AT3G48750 35.739 2.91e-56 184.0
Pdy5g00426 ACH 19 304 Core Cell Cycle gene family AT1G76540 25.816 3.88e-28 111.0
Pdy5g00559 . 18 364 Core Cell Cycle gene family AT5G10270 47.159 4.32e-108 332.0
Pdy5g00636 ACH 1 353 Core Cell Cycle gene family AT5G43080 59.079 2.91e-151 429.0
Pdy5g02031 . 6 391 Core Cell Cycle gene family AT1G18040 76.336 0.0 591.0
Pdy5g02675 . 50 300 Core Cell Cycle gene family AT5G65420 48.289 2.16e-71 223.0
Pdy5g02798 . 21 370 Core Cell Cycle gene family AT5G10270 45.304 1.96e-100 312.0
Pdy6g00194 . 1 505 Core Cell Cycle gene family AT5G10270 77.586 0.0 778.0
Pdy6g01329 . 76 337 Core Cell Cycle gene family AT2G22490 51.136 9.70e-79 243.0
Pdy6g01654 . 20 427 Core Cell Cycle gene family AT5G10270 40.811 5.61e-93 293.0
Pdy6g02386 ACH 83 195 Core Cell Cycle gene family AT1G49620 38.053 1.64e-16 72.4
Pdy6g02441 ACH 10 367 Core Cell Cycle gene family AT5G67260 44.652 1.79e-94 285.0
Pdy6g02874 ACH 1 353 Core Cell Cycle gene family AT5G43080 56.011 5.40e-147 417.0
Pdy6g02893 . 18 286 Core Cell Cycle gene family AT4G34160 48.611 7.57e-86 262.0
Pdy6g03173 ACH 19 304 Core Cell Cycle gene family AT1G76540 25.449 2.01e-26 106.0
Pdy6g03369 . 5 310 Core Cell Cycle gene family AT1G20930 45.141 7.54e-89 276.0
Pdy6g03440 . 18 357 Core Cell Cycle gene family AT5G10270 52.786 4.72e-119 360.0
Pdy6g03605 . 16 459 Core Cell Cycle gene family AT1G80370 50.106 2.77e-138 404.0
Pdy7g00177 . 1 478 Core Cell Cycle gene family AT5G10270 77.207 0.0 727.0
Pdy7g00263 . 18 470 Core Cell Cycle gene family AT5G63610 77.174 0.0 714.0
Pdy7g00500 . 1 301 Core Cell Cycle gene family AT4G03270 38.111 1.08e-62 199.0
Pdy7g01230 . 20 312 Core Cell Cycle gene family AT1G76540 34.237 2.24e-55 184.0
Pdy7g01450 . 52 282 Core Cell Cycle gene family AT1G70210 44.206 6.47e-57 185.0
Pdy7g01480 . 11 354 Core Cell Cycle gene family AT5G43080 47.11 8.16e-111 325.0
Pdy7g01570 ACH 91 195 Core Cell Cycle gene family AT1G49620 46.429 2.89e-21 85.5
Pdy8g00102 . 1 430 Core Cell Cycle gene family AT1G76310 59.954 5.96e-174 492.0
Pdy8g01206 ACH 1 220 Core Cell Cycle gene family AT5G48820 39.331 5.31e-39 133.0
Pdy8g01582 . 18 367 Core Cell Cycle gene family AT5G10270 51.705 6.16e-119 363.0
Pdy8g02068 . 7 323 Core Cell Cycle gene family AT4G37630 35.417 4.68e-50 167.0
Pdy8g02077 . 12 304 Core Cell Cycle gene family AT1G76540 31.31 1.91e-41 147.0
Pdy8g02086 . 12 304 Core Cell Cycle gene family AT1G76540 29.773 5.74e-43 151.0
Pdy8g02141 ACH 86 195 Core Cell Cycle gene family AT1G49620 39.474 2.24e-18 77.8
Pdy8g02246 . 18 388 Core Cell Cycle gene family AT5G10270 43.935 1.39e-99 310.0
Pdy9g00180 . 4 478 Core Cell Cycle gene family AT4G28980 55.625 0.0 527.0
Pdy9g01186 . 223 365 Core Cell Cycle gene family AT1G76310 23.926 4.70e-06 46.2
Pdy9g01330 . 18 366 Core Cell Cycle gene family AT5G10270 51.136 2.97e-117 359.0
Pdy9g01337 . 20 312 Core Cell Cycle gene family AT1G76540 34.576 1.31e-55 184.0
Pdy9g02292 . 18 363 Core Cell Cycle gene family AT5G10270 51.873 6.21e-120 362.0
Pdy9g02380 . 1 294 Core Cell Cycle gene family AT3G48750 36.027 3.34e-66 212.0
Pdy9g02444 ACH 76 244 Core Cell Cycle gene family AT5G27620 24.211 6.04e-06 46.6
Pdy9g02999 . 8 433 Core Cell Cycle gene family AT5G06150 53.935 1.27e-151 435.0
Pdy9g03221 . 20 312 Core Cell Cycle gene family AT1G76540 35.254 2.90e-56 187.0