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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00112 ATGTCAACCTCCGAAGAGTTCCCTATTCATTTTCACGGTTGGTTGCGAATACACAAAGACGGCCGGTGTGAAAGATTCCTCGGAAACGACATCACCGTCCCCGGCACCGACCCTCTCACCGGCGTCCGATCTAAAGACGTCGTTATCTCTCCGGAATCCAAAGTCTTTGTAAGAATTTACATTCCTAAAACCATAATCCCGCTTCGGAAACTTCCTACTTTAATTTACTACCACGGCGGTGCTTTTGTTGTTGAATCAGCAGCTTCTTCTACTTACCAACAGTTTCTAAATCTCATCACCTCAGAATCCAACGTTATTCTAGTGTCGGTAAACTACAGACTGGCACCTGAGTATCCTATTCCAACCGCTTACGAGGATTCTTGGGAAGCAATCAACTGGGTGGCTGCTCATGGTAACGAAAGTGGTCCTGACAAGTGGCTAAACCACTACGCAGATCTTCAAAATGTGTACTTTGCAGGAGATAGTGCCGGGTCTAACATCGCTCACCACATGGCCATCCGTGTCGGGTTGACCCGTTTTAATGGTGTTGGTCTCAAGGGTGTTATTATGCTCCATCCATATTTTAATGGAAAAGACCGGACCCGAGATGAGACTCGGGAGTATCATGAGTTTATGGATCAGATGTGGAAGCTAGCAAACCCTAGGGGACTCGGGTTAGATGACCCATGGTTTAATCCGGGTATGGATCCTTGTGTTTCTAGTTTGGGTTGCTCCAGGGTCTTTGTGTGTGTTAGTGAAAAGGATAAACTAAGGTGTAGGGGACTGAATTACAAGAAAGTGATGGAGAAGAGTGGATGGAAAGGAAAAGTGGAGGTTATGGATATCAAAGGGGAGAGACATGTGTTCTTTTTGTCTAATACTTCATGTGAAAATGCTTGTAAGTTACGCAATAGGATTTGTACCTTTATCAACCCGATACGTAGCAAAGTTTGA 954 44.97 MSTSEEFPIHFHGWLRIHKDGRCERFLGNDITVPGTDPLTGVRSKDVVISPESKVFVRIYIPKTIIPLRKLPTLIYYHGGAFVVESAASSTYQQFLNLITSESNVILVSVNYRLAPEYPIPTAYEDSWEAINWVAAHGNESGPDKWLNHYADLQNVYFAGDSAGSNIAHHMAIRVGLTRFNGVGLKGVIMLHPYFNGKDRTRDETREYHEFMDQMWKLANPRGLGLDDPWFNPGMDPCVSSLGCSRVFVCVSEKDKLRCRGLNYKKVMEKSGWKGKVEVMDIKGERHVFFLSNTSCENACKLRNRICTFINPIRSKV 317
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00112 317 PANTHER ARYLACETAMIDE DEACETYLASE 13 302 IPR050466 -
Pdy4g00112 317 Pfam alpha-beta hydrolase fold 74 290 IPR013094 GO:0016787(InterPro)
Pdy4g00112 317 SUPERFAMILY alpha-beta-Hydrolases 9 311 IPR029058 -
Pdy4g00112 317 Gene3D alpha-beta hydrolase 14 311 IPR029058 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00112 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr1:2660809 Pdy4g00112 Pdy-Chr4:1985797 dispersed
Pdy Pdy-Chr4:1985797 Pdy9g01648 Pdy-Chr9:39038688 dispersed
Pdy Pdy-Chr4:1957870 Pdy4g00112 Pdy-Chr4:1985797 tandem
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Pdy1g00072 . 12 324 Carbohydrate Esterase gene family AT3G48690 45.079 1.74e-85 259.0
Pdy1g00256 . 69 729 Carbohydrate Esterase gene family AT5G36210 72.932 0.0 1035.0
Pdy1g00358 . 91 389 Carbohydrate Esterase gene family AT1G05310 50.167 1.53e-106 317.0
Pdy1g00359 . 91 388 Carbohydrate Esterase gene family AT1G05310 57.047 5.35e-126 367.0
Pdy1g00396 . 61 357 Carbohydrate Esterase gene family AT5G47500 39.203 4.07e-78 242.0
Pdy1g00861 . 42 127 Carbohydrate Esterase gene family AT3G16970 30.435 4.95e-06 42.0
Pdy1g02482 . 4 469 Carbohydrate Esterase gene family AT4G02330 59.615 0.0 554.0
Pdy1g02569 ACH 1 341 Carbohydrate Esterase gene family AT3G63010 73.913 0.0 543.0
Pdy1g03421 . 5 427 Carbohydrate Esterase gene family AT3G09410 60.757 0.0 544.0
Pdy1g03949 . 44 212 Carbohydrate Esterase gene family AT1G25141 27.568 5.07e-11 60.5
Pdy1g04150 . 1 586 Carbohydrate Esterase gene family AT5G53370 63.184 0.0 781.0
Pdy1g04278 ACH 54 218 Carbohydrate Esterase gene family AT3G14310 29.48 4.30e-20 85.5
Pdy1g04279 ACH 59 216 Carbohydrate Esterase gene family AT3G14310 21.519 4.41e-12 62.4
Pdy1g04280 ACH 51 218 Carbohydrate Esterase gene family AT1G53830 34.32 1.59e-25 100.0
Pdy1g04281 . 51 218 Carbohydrate Esterase gene family AT1G53830 34.32 2.20e-25 100.0
Pdy1g04282 . 51 218 Carbohydrate Esterase gene family AT1G53830 32.544 3.85e-23 94.4
Pdy1g04284 . 82 594 Carbohydrate Esterase gene family AT3G47400 50.389 2.78e-176 508.0
Pdy1g04301 . 32 359 Carbohydrate Esterase gene family AT5G61570 51.662 2.51e-106 314.0
Pdy1g04330 . 8 361 Carbohydrate Esterase gene family AT1G69940 50.838 6.99e-135 387.0
Pdy1g05112 . 1 476 Carbohydrate Esterase gene family AT1G26120 55.152 6.47e-179 508.0
Pdy1g05516 ACH 59 219 Carbohydrate Esterase gene family AT3G14310 26.994 2.22e-13 66.2
Pdy1g05517 . 59 219 Carbohydrate Esterase gene family AT3G14310 24.691 1.79e-13 66.6
Pdy1g05518 . 13 554 Carbohydrate Esterase gene family AT1G23200 50.998 0.0 524.0
Pdy2g00051 . 11 333 Carbohydrate Esterase gene family AT1G68620 52.252 2.17e-117 341.0
Pdy2g00179 ACH 118 219 Carbohydrate Esterase gene family AT3G14310 33.01 1.35e-14 67.0
Pdy2g00847 . 24 307 Carbohydrate Esterase gene family AT1G68620 36.877 5.54e-58 189.0
Pdy2g00848 . 23 307 Carbohydrate Esterase gene family AT1G68620 35.762 5.01e-57 186.0
Pdy2g02471 . 24 362 Carbohydrate Esterase gene family AT5G47500 75.811 0.0 536.0
Pdy2g02613 . 232 566 Carbohydrate Esterase gene family AT3G05610 57.015 6.36e-138 420.0
Pdy2g03661 . 23 307 Carbohydrate Esterase gene family AT1G68620 35.855 4.22e-56 184.0
Pdy2g04145 . 14 333 Carbohydrate Esterase gene family AT2G19150 41.39 2.66e-80 246.0
Pdy3g00809 . 2 247 Carbohydrate Esterase gene family AT1G53840 35.317 4.07e-40 143.0
Pdy3g01384 . 207 282 Carbohydrate Esterase gene family AT5G45280 56.579 1.97e-25 94.7
Pdy3g01771 . 30 330 Carbohydrate Esterase gene family AT1G68620 39.159 9.57e-73 226.0
Pdy3g02102 . 5 561 Carbohydrate Esterase gene family AT3G10710 53.86 0.0 635.0
Pdy3g02106 . 5 561 Carbohydrate Esterase gene family AT3G10710 53.191 0.0 613.0
Pdy3g02840 ACH 31 422 Carbohydrate Esterase gene family AT3G02410 71.684 0.0 592.0
Pdy3g02909 . 59 362 Carbohydrate Esterase gene family AT5G47500 37.143 5.36e-70 220.0
Pdy3g03431 . 26 324 Carbohydrate Esterase gene family AT1G24793 60.201 1.13e-132 378.0
Pdy3g04012 . 229 282 Carbohydrate Esterase gene family AT4G19420 51.852 4.43e-10 50.8
Pdy3g04157 . 1 446 Carbohydrate Esterase gene family AT5G14310 61.298 0.0 538.0
Pdy3g04379 . 12 566 Carbohydrate Esterase gene family AT3G05610 47.576 0.0 560.0
Pdy3g04437 . 234 554 Carbohydrate Esterase gene family AT1G23200 55.927 5.72e-133 390.0
Pdy3g04450 ACH 3 375 Carbohydrate Esterase gene family AT4G19420 49.211 1.48e-147 422.0
Pdy3g04916 ACH 75 223 Carbohydrate Esterase gene family AT5G53370 29.487 2.05e-14 69.3
Pdy4g00111 . 1 325 Carbohydrate Esterase gene family AT3G48700 44.985 1.78e-89 270.0
Pdy4g00112 . 13 313 Carbohydrate Esterase gene family AT1G19190 43.894 1.64e-84 256.0
Pdy4g00301 . 31 324 Carbohydrate Esterase gene family AT5G16080 35.179 4.65e-55 181.0
Pdy4g01086 . 15 380 Carbohydrate Esterase gene family AT5G55590 61.995 4.67e-155 439.0
Pdy4g01097 . 93 236 Carbohydrate Esterase gene family AT5G55590 61.379 1.39e-52 169.0
Pdy4g01711 . 8 570 Carbohydrate Esterase gene family AT3G05610 49.123 0.0 603.0
Pdy4g01722 . 7 543 Carbohydrate Esterase gene family AT3G05620 65.193 0.0 725.0
Pdy4g01914 . 4 416 Carbohydrate Esterase gene family AT5G26670 67.797 0.0 599.0
Pdy4g03167 . 58 211 Carbohydrate Esterase gene family AT3G05610 26.923 4.33e-14 67.8
Pdy4g03172 . 1 612 Carbohydrate Esterase gene family AT2G26450 48.465 0.0 587.0
Pdy4g03239 . 6 284 Carbohydrate Esterase gene family AT2G41530 79.643 2.17e-175 484.0
Pdy4g03623 . 34 518 Carbohydrate Esterase gene family AT4G02320 52.342 0.0 522.0
Pdy4g03683 . 1 588 Carbohydrate Esterase gene family AT2G47030 37.4 1.63e-130 393.0
Pdy4g03798 . 17 511 Carbohydrate Esterase gene family AT2G45220 65.476 0.0 685.0
Pdy4g03801 ACH 36 224 Carbohydrate Esterase gene family AT5G53370 22.727 7.50e-11 58.9
Pdy4g03802 . 79 225 Carbohydrate Esterase gene family AT5G53370 27.108 2.90e-09 54.7
Pdy4g03804 . 46 224 Carbohydrate Esterase gene family AT5G53370 27.551 3.02e-11 60.1
Pdy4g03805 . 59 219 Carbohydrate Esterase gene family AT3G14310 25.444 1.49e-12 63.9
Pdy4g03806 . 75 229 Carbohydrate Esterase gene family AT5G53370 27.273 3.18e-09 54.3
Pdy4g03841 . 36 315 Carbohydrate Esterase gene family AT1G68620 36.634 9.38e-51 170.0
Pdy5g00023 . 55 592 Carbohydrate Esterase gene family AT3G14310 55.941 0.0 566.0
Pdy5g00733 . 4 325 Carbohydrate Esterase gene family AT3G48700 44.444 8.38e-92 276.0
Pdy5g02050 . 93 606 Carbohydrate Esterase gene family AT4G33230 37.847 9.43e-119 363.0
Pdy5g02113 . 34 514 Carbohydrate Esterase gene family AT4G02320 52.761 0.0 519.0
Pdy5g02114 . 1 571 Carbohydrate Esterase gene family AT4G02330 53.054 0.0 596.0
Pdy5g02130 . 52 199 Carbohydrate Esterase gene family AT4G15980 29.801 1.99e-16 74.7
Pdy5g02199 ACH 1 343 Carbohydrate Esterase gene family AT3G63010 72.701 0.0 528.0
Pdy6g00436 . 29 324 Carbohydrate Esterase gene family AT5G16080 34.653 5.22e-53 176.0
Pdy6g00599 . 25 327 Carbohydrate Esterase gene family AT5G16080 34.494 2.25e-51 172.0
Pdy6g00600 . 35 323 Carbohydrate Esterase gene family AT5G16080 37.582 8.99e-58 188.0
Pdy6g00601 . 35 245 Carbohydrate Esterase gene family AT5G16080 41.014 5.82e-44 149.0
Pdy6g00602 . 31 321 Carbohydrate Esterase gene family AT5G16080 35.526 3.30e-56 184.0
Pdy6g00603 . 31 321 Carbohydrate Esterase gene family AT5G16080 35.526 3.30e-56 184.0
Pdy6g00607 . 41 335 Carbohydrate Esterase gene family AT5G16080 33.125 3.55e-48 163.0
Pdy6g01861 . 55 201 Carbohydrate Esterase gene family AT1G25141 24.051 1.25e-06 47.4
Pdy6g01990 . 1 446 Carbohydrate Esterase gene family AT5G14310 69.462 0.0 638.0
Pdy6g03835 . 18 592 Carbohydrate Esterase gene family AT3G14310 65.136 0.0 740.0
Pdy7g00228 . 68 390 Carbohydrate Esterase gene family AT1G05310 70.279 0.0 508.0
Pdy7g00229 . 486 695 Carbohydrate Esterase gene family AT5G36210 28.125 3.35e-19 90.9
Pdy7g01054 . 4 325 Carbohydrate Esterase gene family AT3G48700 38.037 2.95e-71 223.0
Pdy7g01638 . 81 379 Carbohydrate Esterase gene family AT5G55590 43.333 1.21e-82 253.0
Pdy7g01805 . 39 118 Carbohydrate Esterase gene family AT3G16970 30.12 3.43e-08 48.5
Pdy7g01963 . 18 592 Carbohydrate Esterase gene family AT3G14310 61.368 0.0 715.0
Pdy7g01965 . 37 592 Carbohydrate Esterase gene family AT3G14310 58.73 0.0 651.0
Pdy7g01966 . 12 592 Carbohydrate Esterase gene family AT3G14310 57.555 0.0 656.0
Pdy7g01967 . 1 581 Carbohydrate Esterase gene family AT1G53840 60.274 0.0 702.0
Pdy7g02292 . 61 357 Carbohydrate Esterase gene family AT5G47500 49.664 6.87e-104 309.0
Pdy7g02739 . 54 583 Carbohydrate Esterase gene family AT1G53830 41.53 5.30e-134 402.0
Pdy7g02746 . 4 526 Carbohydrate Esterase gene family AT3G43270 58.634 0.0 641.0
Pdy8g01540 . 173 546 Carbohydrate Esterase gene family AT5G09760 68.351 0.0 543.0
Pdy8g01541 . 32 134 Carbohydrate Esterase gene family AT5G09760 49.515 3.40e-23 92.0
Pdy8g01542 . 37 546 Carbohydrate Esterase gene family AT5G09760 67.451 0.0 704.0
Pdy8g01591 . 1 341 Carbohydrate Esterase gene family AT3G05120 75.575 0.0 536.0
Pdy8g01984 . 12 342 Carbohydrate Esterase gene family AT5G16080 53.116 5.65e-116 337.0
Pdy8g02178 ACH 30 422 Carbohydrate Esterase gene family AT3G02410 71.501 0.0 577.0
Pdy8g03293 . 1 359 Carbohydrate Esterase gene family AT5G61570 49.867 4.55e-112 329.0
Pdy8g03314 . 76 594 Carbohydrate Esterase gene family AT3G47400 52.591 0.0 551.0
Pdy8g03315 ACH 54 222 Carbohydrate Esterase gene family AT1G53830 31.395 5.47e-19 82.8
Pdy8g03316 ACH 59 217 Carbohydrate Esterase gene family AT3G14310 23.27 9.60e-14 67.4
Pdy8g03317 ACH 58 218 Carbohydrate Esterase gene family AT1G53830 29.878 8.97e-20 84.7
Pdy8g03320 . 11 511 Carbohydrate Esterase gene family AT2G45220 62.963 0.0 656.0
Pdy8g03321 . 1 511 Carbohydrate Esterase gene family AT2G45220 39.205 1.19e-127 380.0
Pdy8g03386 . 14 404 Carbohydrate Esterase gene family AT5G23870 63.384 0.0 534.0
Pdy8g03445 . 50 597 Carbohydrate Esterase gene family AT3G49220 66.431 0.0 775.0
Pdy8g03446 . 420 709 Carbohydrate Esterase gene family AT5G36210 22.623 9.28e-07 50.4
Pdy9g00626 . 229 282 Carbohydrate Esterase gene family AT4G19420 51.852 4.43e-10 50.8
Pdy9g01188 . 11 321 Carbohydrate Esterase gene family AT3G48690 40.125 1.27e-78 241.0
Pdy9g01201 . 1 416 Carbohydrate Esterase gene family AT5G26670 67.064 0.0 602.0
Pdy9g01648 . 3 326 Carbohydrate Esterase gene family AT3G48700 42.025 1.63e-83 254.0
Pdy9g02355 . 3 375 Carbohydrate Esterase gene family AT4G19420 54.377 8.48e-155 440.0
Pdy9g02489 ACH 7 389 Carbohydrate Esterase gene family AT4G19420 63.117 0.0 548.0
Pdy9g02490 . 6 389 Carbohydrate Esterase gene family AT4G19420 61.299 0.0 525.0
Pdy9g02804 ACH 71 235 Carbohydrate Esterase gene family AT5G53370 26.857 3.93e-16 74.3
Pdy9g02805 . 53 213 Carbohydrate Esterase gene family AT3G14310 28.485 1.13e-17 78.6
Pdy9g02806 . 51 216 Carbohydrate Esterase gene family AT1G53830 32.544 1.11e-18 80.9
Pdy9g03169 . 16 511 Carbohydrate Esterase gene family AT2G45220 66.601 0.0 700.0
Pdy9g03170 . 4 511 Carbohydrate Esterase gene family AT2G45220 62.016 0.0 657.0
Pdy9g03174 ACH 56 220 Carbohydrate Esterase gene family AT1G53830 27.647 1.29e-12 63.9
Pdy9g03207 . 57 321 Carbohydrate Esterase gene family AT5G16080 32.967 2.15e-43 150.0